{
    "type": "genome",
    "identifier": "GCF_904063065.1",
    "organism": "Pseudomonas paraversuta",
    "title": "Pseudomonas paraversuta",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "CEBITEC",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_904063065.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA7131757",
        "wgs_master": "CAJFCL000000000.1",
        "refseq_category": "na",
        "taxid": "2750624",
        "species_taxid": "2750624",
        "organism_name": "Pseudomonas paraversuta",
        "infraspecific_name": "strain=V4/DAB/S4/2a",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/02/02",
        "asm_name": "V4",
        "asm_submitter": "CEBITEC",
        "gbrs_paired_asm": "GCA_904063065.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/904/063/065/GCF_904063065.1_V4",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5003389",
        "genome_size_ungapped": "5003389",
        "gc_percent": "58.500000",
        "replicon_count": "0",
        "scaffold_count": "69",
        "contig_count": "69",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-01-30",
        "total_gene_count": "4619",
        "protein_coding_gene_count": "4475",
        "non_coding_gene_count": "86",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-02-02",
    "dateModified": "2021-02-02",
    "datePublished": "2021-02-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudomonas paraversuta"
        ],
        "sample_taxid": [
            "2750624"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.406 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5002803",
        "Number of Sequences": "65",
        "Longest Sequences (bp)": "703725",
        "N50 (bp)": "521895",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "58.6",
        "Number of CDSs": "4523",
        "Average Protein Length": "320.5",
        "Coding Ratio (%)": "86.9",
        "Number of rRNAs": "4",
        "Number of tRNAs": "67",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Pseudomonas paraversuta",
                "strain": "strain=V4/DAB/S4/2a",
                "accession": "GCA_904063065.1",
                "taxid": 2750624,
                "species_taxid": 2750624,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1644,
                "total_fragments": 1646,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Pseudomonas versuta",
                "strain": "strain=L10.10",
                "accession": "GCA_001294575.1",
                "taxid": 1788301,
                "species_taxid": 1788301,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.4788,
                "matched_fragments": 1410,
                "total_fragments": 1646,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas deceptionensis",
                "strain": "strain=DSM 26521",
                "accession": "GCA_001042895.1",
                "taxid": 882211,
                "species_taxid": 882211,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.2947,
                "matched_fragments": 1258,
                "total_fragments": 1646,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas deceptionensis",
                "strain": "strain=LMG 25555",
                "accession": "GCA_900106095.1",
                "taxid": 882211,
                "species_taxid": 882211,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.2877,
                "matched_fragments": 1268,
                "total_fragments": 1646,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas fragi",
                "strain": "strain=NRRL B-727",
                "accession": "GCA_900105835.1",
                "taxid": 296,
                "species_taxid": 296,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.8006,
                "matched_fragments": 1228,
                "total_fragments": 1646,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas psychrophila",
                "strain": "strain=DSM 17535",
                "accession": "GCA_001043005.1",
                "taxid": 122355,
                "species_taxid": 122355,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.4702,
                "matched_fragments": 1233,
                "total_fragments": 1646,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas psychrophila",
                "strain": "strain=CCUG 53877",
                "accession": "GCA_008801485.1",
                "taxid": 122355,
                "species_taxid": 122355,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.4386,
                "matched_fragments": 1239,
                "total_fragments": 1646,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas helleri",
                "strain": "strain=DSM 29165",
                "accession": "GCA_001043025.1",
                "taxid": 1608996,
                "species_taxid": 1608996,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.6158,
                "matched_fragments": 1125,
                "total_fragments": 1646,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas sputi",
                "strain": "strain=BML-PP014",
                "accession": "GCA_021603585.1",
                "taxid": 2892325,
                "species_taxid": 2892325,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.7106,
                "matched_fragments": 890,
                "total_fragments": 1646,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas pharyngis",
                "strain": "strain=BML-PP036",
                "accession": "GCA_021602345.1",
                "taxid": 2892333,
                "species_taxid": 2892333,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.7074,
                "matched_fragments": 921,
                "total_fragments": 1646,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas karstica",
                "strain": "strain=CCM 7891",
                "accession": "GCA_009707515.1",
                "taxid": 1055468,
                "species_taxid": 1055468,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.408,
                "matched_fragments": 872,
                "total_fragments": 1646,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas faucium",
                "strain": "strain=BML-PP048",
                "accession": "GCA_013373935.1",
                "taxid": 2740518,
                "species_taxid": 2740518,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.8284,
                "matched_fragments": 751,
                "total_fragments": 1646,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas faucium",
                "strain": "strain=BML-PP048",
                "accession": "GCA_021602585.1",
                "taxid": 2740518,
                "species_taxid": 2740518,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.7469,
                "matched_fragments": 786,
                "total_fragments": 1646,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_904063065.1",
                "gtdb_species": "s__Pseudomonas_E paraversuta",
                "ani": 100.0,
                "matched_fragments": 1644,
                "total_fragments": 1646,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.24",
                "min_intra_species_ani": "99.22",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 9,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001294575.1",
                "gtdb_species": "s__Pseudomonas_E versuta",
                "ani": 91.4674,
                "matched_fragments": 1411,
                "total_fragments": 1646,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.68",
                "min_intra_species_ani": "99.38",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_900106095.1",
                "gtdb_species": "s__Pseudomonas_E deceptionensis",
                "ani": 86.2935,
                "matched_fragments": 1267,
                "total_fragments": 1646,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900105835.1",
                "gtdb_species": "s__Pseudomonas_E fragi",
                "ani": 85.8152,
                "matched_fragments": 1226,
                "total_fragments": 1646,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.76",
                "min_intra_species_ani": "96.96",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 28,
                "status": "-"
            },
            {
                "accession": "GCF_002269505.1",
                "gtdb_species": "s__Pseudomonas_E fragi_D",
                "ani": 85.7005,
                "matched_fragments": 1198,
                "total_fragments": 1646,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.09",
                "min_intra_species_ani": "96.09",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900618535.1",
                "gtdb_species": "s__Pseudomonas_E bubulae",
                "ani": 85.5244,
                "matched_fragments": 1211,
                "total_fragments": 1646,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.12",
                "min_intra_species_ani": "98.96",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 18,
                "status": "-"
            },
            {
                "accession": "GCF_001043005.1",
                "gtdb_species": "s__Pseudomonas_E psychrophila",
                "ani": 85.4524,
                "matched_fragments": 1235,
                "total_fragments": 1646,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.62",
                "min_intra_species_ani": "99.23",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_900475285.1",
                "gtdb_species": "s__Pseudomonas_E taetrolens",
                "ani": 84.9205,
                "matched_fragments": 1151,
                "total_fragments": 1646,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_001043025.1",
                "gtdb_species": "s__Pseudomonas_E helleri",
                "ani": 84.6058,
                "matched_fragments": 1127,
                "total_fragments": 1646,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.29",
                "min_intra_species_ani": "96.40",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 22,
                "status": "-"
            },
            {
                "accession": "GCF_902497875.1",
                "gtdb_species": "s__Pseudomonas_E fluorescens_BR",
                "ani": 81.6191,
                "matched_fragments": 944,
                "total_fragments": 1646,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.248,
        "cell_length": 0.186,
        "doubling_h": -0.025,
        "growth_tmp": 28.767,
        "optimum_tmp": 27.972,
        "optimum_ph": 7.258,
        "genome_size": 5663774.24,
        "gc_content": 60.938,
        "coding_genes": 5204.79,
        "rRNA16S_genes": 5.319,
        "tRNA_genes": 67.35,
        "gram_stain": 0.0,
        "sporulation": 0.013,
        "motility": 0.975,
        "range_salinity": 0.666,
        "facultative_respiration": 0.021,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.978,
        "mesophilic_range_tmp": 0.926,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.073,
        "bacillus_cell_shape": 0.988,
        "coccus_cell_shape": 0.011,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Pseudomonas",
        "paraversuta"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}