{ "type": "genome", "identifier": "GCF_904423875.1", "organism": "Metabacillus idriensis", "title": "Metabacillus idriensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "IHU - Mediterranee Infection", "publication": [ {} ], "properties": { "assembly_accession": "GCF_904423875.1", "bioproject": "PRJNA224116", "biosample": "SAMEA7297396", "wgs_master": "CAJGAA000000000.1", "refseq_category": "reference genome", "taxid": "324768", "species_taxid": "324768", "organism_name": "Metabacillus idriensis", "infraspecific_name": "strain=DSM-19097", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/09/25", "asm_name": "G1763", "asm_submitter": "IHU - Mediterranee Infection", "gbrs_paired_asm": "GCA_904423875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/904/423/875/GCF_904423875.1_G1763", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4889597", "genome_size_ungapped": "4889597", "gc_percent": "40.500000", "replicon_count": "0", "scaffold_count": "23", "contig_count": "23", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_904423875.1-RS_2024_11_06", "annotation_date": "2024-11-06", "total_gene_count": "4996", "protein_coding_gene_count": "4826", "non_coding_gene_count": "110", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-09-25", "dateModified": "2020-09-25", "datePublished": "2020-09-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Metabacillus idriensis" ], "sample_taxid": [ "324768" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.383 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4889597", "Number of Sequences": "23", "Longest Sequences (bp)": "1789034", "N50 (bp)": "907837", "Gap Ratio (%)": "0.000061", "GCcontent (%)": "40.7", "Number of CDSs": "4961", "Average Protein Length": "280.1", "Coding Ratio (%)": "85.3", "Number of rRNAs": "11", "Number of tRNAs": "81", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Metabacillus idriensis", "strain": "strain=DSM-19097", "accession": "GCA_904423875.1", "taxid": 324768, "species_taxid": 324768, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1617, "total_fragments": 1618, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Metabacillus idriensis", "strain": "strain=DSM 19097", "accession": "GCA_009674765.1", "taxid": 324768, "species_taxid": 324768, "relation_to_type": "type", "validated": true, "ani": 99.9929, "matched_fragments": 1600, "total_fragments": 1618, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Metabacillus dongyingensis", "strain": "strain=BY2G20", "accession": "GCA_019933155.2", "taxid": 2874282, "species_taxid": 2874282, "relation_to_type": "type", "validated": true, "ani": 88.5912, "matched_fragments": 1247, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus indicus", "strain": "strain=LMG 22858", "accession": "GCA_000708755.2", "taxid": 246786, "species_taxid": 246786, "relation_to_type": "type", "validated": true, "ani": 80.5213, "matched_fragments": 693, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niallia alba", "strain": "strain=UniB3", "accession": "GCA_012933555.1", "taxid": 2729105, "species_taxid": 2729105, "relation_to_type": "type", "validated": true, "ani": 78.021, "matched_fragments": 82, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus subtilis subsp. subtilis", "strain": "strain=168", "accession": "GCA_002009095.1", "taxid": 135461, "species_taxid": 1423, "relation_to_type": "type", "validated": true, "ani": 77.6904, "matched_fragments": 99, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus oleivorans", "strain": "strain=JC228", "accession": "GCA_900207585.1", "taxid": 1448271, "species_taxid": 1448271, "relation_to_type": "type", "validated": true, "ani": 77.6767, "matched_fragments": 62, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus bambusae", "strain": "strain=BG109", "accession": "GCA_017497975.1", "taxid": 2795218, "species_taxid": 2795218, "relation_to_type": "type", "validated": true, "ani": 77.6532, "matched_fragments": 167, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus flavus", "strain": "strain=KIGAM252", "accession": "GCA_018283675.1", "taxid": 2823519, "species_taxid": 2823519, "relation_to_type": "type", "validated": true, "ani": 77.617, "matched_fragments": 143, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus litoralis", "strain": "strain=SW-211", "accession": "GCA_007994985.1", "taxid": 152268, "species_taxid": 152268, "relation_to_type": "suspected-type", "validated": true, "ani": 77.5933, "matched_fragments": 132, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus endolithicus", "strain": "strain=KCTC 33579", "accession": "GCA_023078335.1", "taxid": 1535204, "species_taxid": 1535204, "relation_to_type": "type", "validated": true, "ani": 77.4468, "matched_fragments": 157, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus crassostreae", "strain": "strain=DSM 24486", "accession": "GCA_016908395.1", "taxid": 929098, "species_taxid": 929098, "relation_to_type": "type", "validated": true, "ani": 77.3551, "matched_fragments": 143, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus swezeyi", "strain": "strain=NRRL B-41294", "accession": "GCA_001969815.1", "taxid": 1925020, "species_taxid": 1925020, "relation_to_type": "type", "validated": true, "ani": 77.3085, "matched_fragments": 86, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cytobacillus solani", "strain": "strain=FJAT-18043", "accession": "GCA_001420595.1", "taxid": 1637975, "species_taxid": 1637975, "relation_to_type": "type", "validated": true, "ani": 77.2931, "matched_fragments": 102, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus licheniformis", "strain": "strain=DSM 13", "accession": "GCA_022630555.1", "taxid": 1402, "species_taxid": 1402, "relation_to_type": "type", "validated": true, "ani": 77.2893, "matched_fragments": 100, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Falsibacillus albus", "strain": "strain=GY 10110", "accession": "GCA_003668575.1", "taxid": 2478915, "species_taxid": 2478915, "relation_to_type": "type", "validated": true, "ani": 76.9493, "matched_fragments": 92, "total_fragments": 1618, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009674765.1", "gtdb_species": "s__Bacillus_P idriensis", "ani": 99.9929, "matched_fragments": 1600, "total_fragments": 1618, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus_P", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.40", "min_intra_species_ani": "95.01", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCF_014235785.1", "gtdb_species": "s__Bacillus_P sp002858905", "ani": 82.1814, "matched_fragments": 822, "total_fragments": 1618, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus_P", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.85", "min_intra_species_ani": "98.20", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000708755.2", "gtdb_species": "s__Bacillus_P indicus", "ani": 80.4885, "matched_fragments": 695, "total_fragments": 1618, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus_P", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.93", "min_intra_species_ani": "97.85", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_002577655.1", "gtdb_species": "s__Metabacillus sp002577655", "ani": 78.3796, "matched_fragments": 160, "total_fragments": 1618, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Metabacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000294775.2", "gtdb_species": "s__Cytobacillus oceanisediminis_B", "ani": 77.8354, "matched_fragments": 125, "total_fragments": 1618, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.75", "min_intra_species_ani": "98.26", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.83", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_017303275.1", "gtdb_species": "s__Cytobacillus sp017303275", "ani": 77.7246, "matched_fragments": 125, "total_fragments": 1618, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000009045.1", "gtdb_species": "s__Bacillus subtilis", "ani": 77.709, "matched_fragments": 101, "total_fragments": 1618, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.63", "min_intra_species_ani": "95.03", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.86", "num_clustered_genomes": 485, "status": "-" }, { "accession": "GCF_900207585.1", "gtdb_species": "s__Bacillus_BF oleivorans", "ani": 77.6832, "matched_fragments": 64, "total_fragments": 1618, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__JC228;f__JC228;g__Bacillus_BF", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018283675.1", "gtdb_species": "s__Metabacillus_B sp018283675", "ani": 77.6383, "matched_fragments": 142, "total_fragments": 1618, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Metabacillus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001969855.1", "gtdb_species": "s__Bacillus haynesii", "ani": 77.6232, "matched_fragments": 84, "total_fragments": 1618, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus", "ani_circumscription_radius": 95.4556, "mean_intra_species_ani": "97.08", "min_intra_species_ani": "96.53", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.92", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_001038755.1", "gtdb_species": "s__Cytobacillus firmus_B", "ani": 77.5578, "matched_fragments": 114, "total_fragments": 1618, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.85", "min_intra_species_ani": "96.97", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.91", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_010093085.1", "gtdb_species": "s__Bacillus sp010093085", "ani": 77.5368, "matched_fragments": 99, "total_fragments": 1618, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007994985.1", "gtdb_species": "s__Metabacillus litoralis", "ani": 77.502, "matched_fragments": 136, "total_fragments": 1618, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Metabacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003816055.1", "gtdb_species": "s__Metabacillus_B sp003816055", "ani": 77.4399, "matched_fragments": 147, "total_fragments": 1618, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Metabacillus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001969815.1", "gtdb_species": "s__Bacillus swezeyi", "ani": 77.2749, "matched_fragments": 87, "total_fragments": 1618, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.68", "min_intra_species_ani": "96.91", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_003600835.1", "gtdb_species": "s__Pseudobacillus sp003600835", "ani": 77.2634, "matched_fragments": 62, "total_fragments": 1618, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__Domibacillaceae;g__Pseudobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000011645.1", "gtdb_species": "s__Bacillus licheniformis", "ani": 77.2118, "matched_fragments": 105, "total_fragments": 1618, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus", "ani_circumscription_radius": 95.4556, "mean_intra_species_ani": "99.64", "min_intra_species_ani": "99.26", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.81", "num_clustered_genomes": 213, "status": "-" }, { "accession": "GCF_000732485.2", "gtdb_species": "s__Metabacillus_B sp000732485", "ani": 77.0246, "matched_fragments": 156, "total_fragments": 1618, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Metabacillus_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001956215.1", "gtdb_species": "s__Cytobacillus sp001956215", "ani": 76.8541, "matched_fragments": 113, "total_fragments": 1618, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013303125.1", "gtdb_species": "s__Calidifontibacillus erzurumensis", "ani": 76.649, "matched_fragments": 62, "total_fragments": 1618, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_C;f__Bacillaceae_J;g__Calidifontibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Metabacillus", "idriensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }