{ "type": "genome", "identifier": "GCF_904842695.1", "organism": "Gulosibacter hominis", "title": "Gulosibacter hominis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University Hospital Basel", "publication": [ {} ], "properties": { "assembly_accession": "GCF_904842695.1", "bioproject": "PRJNA224116", "biosample": "SAMEA7375118", "wgs_master": "CAJGWQ000000000.1", "refseq_category": "reference genome", "taxid": "2770504", "species_taxid": "2770504", "organism_name": "Gulosibacter hominis", "infraspecific_name": "strain=401352-2018", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/11/01", "asm_name": "401352-18", "asm_submitter": "University Hospital Basel", "gbrs_paired_asm": "GCA_904842695.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/904/842/695/GCF_904842695.1_401352-18", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2341382", "genome_size_ungapped": "2341382", "gc_percent": "62.000000", "replicon_count": "0", "scaffold_count": "33", "contig_count": "33", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_904842695.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "2130", "protein_coding_gene_count": "2054", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-11-01", "dateModified": "2020-11-01", "datePublished": "2020-11-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Gulosibacter hominis" ], "sample_taxid": [ "2770504" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [ "healthy" ], "sample_host_disease_id": [], "sample_host_location": [ "Switzerland" ], "sample_host_location_id": [], "data_size": "0.655 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2341382", "Number of Sequences": "33", "Longest Sequences (bp)": "508219", "N50 (bp)": "145717", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.0", "Number of CDSs": "2088", "Average Protein Length": "334.8", "Coding Ratio (%)": "89.6", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gulosibacter hominis", "strain": "strain=401352-2018", "accession": "GCA_904842695.1", "taxid": 2770504, "species_taxid": 2770504, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 760, "total_fragments": 765, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gulosibacter macacae", "strain": "strain=YIM 102482-1", "accession": "GCA_003865375.1", "taxid": 2488791, "species_taxid": 2488791, "relation_to_type": "type", "validated": true, "ani": 78.4277, "matched_fragments": 255, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gulosibacter faecalis", "strain": "strain=B187", "accession": "GCA_000381765.1", "taxid": 272240, "species_taxid": 272240, "relation_to_type": "type", "validated": true, "ani": 78.1479, "matched_fragments": 183, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gulosibacter molinativorax", "strain": "strain=ON4", "accession": "GCA_003010915.2", "taxid": 256821, "species_taxid": 256821, "relation_to_type": "type", "validated": true, "ani": 78.0477, "matched_fragments": 154, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gulosibacter molinativorax", "strain": "strain=DSM 13485", "accession": "GCA_000425685.1", "taxid": 256821, "species_taxid": 256821, "relation_to_type": "type", "validated": true, "ani": 77.9348, "matched_fragments": 155, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter chironomi", "strain": "strain=DSM 19883", "accession": "GCA_000421845.1", "taxid": 491918, "species_taxid": 491918, "relation_to_type": "type", "validated": true, "ani": 77.1823, "matched_fragments": 91, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces cavernae", "strain": "strain=SYSU K20354", "accession": "GCA_021044935.1", "taxid": 2898659, "species_taxid": 2898659, "relation_to_type": "type", "validated": true, "ani": 76.9673, "matched_fragments": 95, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces agglutinans", "strain": "strain=CFH 90414", "accession": "GCA_009647605.1", "taxid": 2662258, "species_taxid": 2662258, "relation_to_type": "type", "validated": true, "ani": 76.9292, "matched_fragments": 96, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium luticocti", "strain": "strain=DSM 19459", "accession": "GCA_000422405.1", "taxid": 451764, "species_taxid": 451764, "relation_to_type": "type", "validated": true, "ani": 76.9158, "matched_fragments": 95, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycetocola lacteus", "strain": "strain=JCM 11654", "accession": "GCA_003667575.1", "taxid": 76637, "species_taxid": 76637, "relation_to_type": "type", "validated": true, "ani": 76.88, "matched_fragments": 74, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbiconiux ginsengi", "strain": "strain=CGMCC 4.3491", "accession": "GCA_900107435.1", "taxid": 381665, "species_taxid": 381665, "relation_to_type": "type", "validated": true, "ani": 76.8385, "matched_fragments": 93, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces flavus", "strain": "strain=CPCC 202695", "accession": "GCA_004366335.2", "taxid": 589382, "species_taxid": 589382, "relation_to_type": "type", "validated": true, "ani": 76.7734, "matched_fragments": 100, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoclavibacter caeni", "strain": "strain=DSM 26484", "accession": "GCA_013410595.1", "taxid": 908846, "species_taxid": 908846, "relation_to_type": "type", "validated": true, "ani": 76.5452, "matched_fragments": 56, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoclavibacter caeni", "strain": "strain=JCM 16921", "accession": "GCA_008831125.1", "taxid": 908846, "species_taxid": 908846, "relation_to_type": "type", 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"matched_fragments": 53, "total_fragments": 765, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_904848455.1", "gtdb_species": "s__Gulosibacter sp904848455", "ani": 98.001, "matched_fragments": 679, "total_fragments": 765, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Gulosibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.81", "min_intra_species_ani": "97.60", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_003865375.1", "gtdb_species": "s__Gulosibacter macacae", "ani": 78.435, "matched_fragments": 254, "total_fragments": 765, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Gulosibacter", 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"mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000425685.1", "gtdb_species": "s__Gulosibacter molinativorax", "ani": 77.9348, "matched_fragments": 155, "total_fragments": 765, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Gulosibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.97", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900626105.1", "gtdb_species": "s__Gulosibacter sp900626105", "ani": 77.9178, "matched_fragments": 198, "total_fragments": 765, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Gulosibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": 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"status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.402, "cell_length": -0.036, "doubling_h": null, "growth_tmp": 33.5, "optimum_tmp": 36.5, "optimum_ph": 8.0, "genome_size": 3379783.5, "gc_content": 64.3, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Gulosibacter", "hominis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }