{ "type": "genome", "identifier": "GCF_904848585.1", "organism": "Paraburkholderia kirstenboschensis", "title": "Paraburkholderia kirstenboschensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "LM-UGent", "publication": [ {} ], "properties": { "assembly_accession": "GCF_904848585.1", "bioproject": "PRJNA224116", "biosample": "SAMEA7384723", "wgs_master": "CAJHCR000000000.1", "refseq_category": "na", "taxid": "1245436", "species_taxid": "1245436", "organism_name": "Paraburkholderia kirstenboschensis", "infraspecific_name": "strain=LMG 28727", "isolate": "LMG 28727", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/11/21", "asm_name": "LMG 28727", "asm_submitter": "LM-UGent", "gbrs_paired_asm": "GCA_904848585.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/904/848/585/GCF_904848585.1_LMG_28727", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8587385", "genome_size_ungapped": "8587385", "gc_percent": "62.000000", "replicon_count": "0", "scaffold_count": "105", "contig_count": "105", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-01-30", "total_gene_count": "7725", "protein_coding_gene_count": "7363", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-11-21", "dateModified": "2020-11-21", "datePublished": "2020-11-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Paraburkholderia kirstenboschensis" ], "sample_taxid": [ "1245436" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia graminis", "strain": "strain=C4D1M", "accession": "GCA_000172415.1", "taxid": 60548, "species_taxid": 60548, "relation_to_type": "type", "validated": true, "ani": 87.606, "matched_fragments": 1766, "total_fragments": 2816, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia nemoris", "strain": "strain=LMG 31836", "accession": "GCA_905221015.1", "taxid": 2793076, "species_taxid": 2793076, "relation_to_type": "type", "validated": true, "ani": 84.4999, "matched_fragments": 1541, "total_fragments": 2816, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia haematera", "strain": "strain=LMG 31837", "accession": "GCA_905220975.1", "taxid": 2793077, "species_taxid": 2793077, "relation_to_type": "type", "validated": true, "ani": 84.351, "matched_fragments": 1442, "total_fragments": 2816, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia domus", "strain": "strain=LMG 31832", "accession": "GCA_905220705.1", "taxid": 2793075, "species_taxid": 2793075, "relation_to_type": "type", "validated": true, "ani": 84.338, "matched_fragments": 1479, "total_fragments": 2816, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia podalyriae", "strain": "strain=WC7.3b", "accession": "GCA_014397785.1", "taxid": 1938811, "species_taxid": 1938811, "relation_to_type": "type", "validated": true, "ani": 83.9729, "matched_fragments": 1566, "total_fragments": 2816, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_904848585.1", "gtdb_species": "s__Paraburkholderia kirstenboschensis", "ani": 100.0, "matched_fragments": 2813, "total_fragments": 2816, "gtdb_taxonomy": 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"coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Paraburkholderia", "kirstenboschensis" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }