{ "tc_result": [ { "organism_name": "Paraburkholderia sabiae", "strain": "strain=LMG 24235", "accession": "GCA_904848645.1", "taxid": 273251, "species_taxid": 273251, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3165, "total_fragments": 3170, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Paraburkholderia azotifigens", "strain": "strain=NF 2-5-3", "accession": "GCA_007995085.1", "taxid": 2057004, "species_taxid": 2057004, "relation_to_type": "type", "validated": true, "ani": 91.7636, "matched_fragments": 2401, "total_fragments": 3170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia phymatum", "strain": "strain=LMG 21445", "accession": "GCA_902833665.1", "taxid": 148447, "species_taxid": 148447, "relation_to_type": "type", "validated": true, "ani": 89.1523, "matched_fragments": 2105, "total_fragments": 3170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia phymatum", "strain": "strain=STM815", "accession": "GCA_000020045.1", "taxid": 148447, "species_taxid": 148447, "relation_to_type": "type", "validated": true, "ani": 89.1075, "matched_fragments": 2117, "total_fragments": 3170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia terrae", "strain": "strain=NBRC 100964", "accession": "GCA_000739835.1", "taxid": 311230, "species_taxid": 311230, "relation_to_type": "type", "validated": true, "ani": 88.2734, "matched_fragments": 2135, "total_fragments": 3170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia terrae", "strain": "strain=DSM 17804", "accession": "GCA_002902925.1", "taxid": 311230, "species_taxid": 311230, "relation_to_type": "type", "validated": true, "ani": 88.2076, "matched_fragments": 2211, "total_fragments": 3170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia hospita", "strain": "strain=LMG 20598", "accession": "GCA_902833685.1", "taxid": 169430, "species_taxid": 169430, "relation_to_type": "type", "validated": true, "ani": 88.1094, "matched_fragments": 2226, "total_fragments": 3170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia caribensis", "strain": "strain=LMG 18531", "accession": "GCA_902833515.1", "taxid": 75105, "species_taxid": 75105, "relation_to_type": "type", "validated": true, "ani": 88.0285, "matched_fragments": 2088, "total_fragments": 3170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia caribensis", "strain": "strain=DSM 13236", "accession": "GCA_002902945.1", "taxid": 75105, "species_taxid": 75105, "relation_to_type": "type", "validated": true, "ani": 88.0184, "matched_fragments": 2122, "total_fragments": 3170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia piptadeniae", "strain": "strain=STM 7183", "accession": "GCA_900007165.2", "taxid": 1701573, "species_taxid": 1701573, "relation_to_type": "type", "validated": true, "ani": 87.0916, "matched_fragments": 1870, "total_fragments": 3170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia flava", "strain": "strain=LD6", "accession": "GCA_004359985.1", "taxid": 2547393, "species_taxid": 2547393, "relation_to_type": "type", "validated": true, "ani": 82.9334, "matched_fragments": 1333, "total_fragments": 3170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia gardini", "strain": "strain=LMG 32171", "accession": "GCA_907164575.1", "taxid": 2823469, "species_taxid": 2823469, "relation_to_type": "type", "validated": true, "ani": 82.6012, "matched_fragments": 1238, "total_fragments": 3170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia podalyriae", "strain": "strain=WC7.3b", "accession": "GCA_014397785.1", "taxid": 1938811, "species_taxid": 1938811, "relation_to_type": "type", "validated": true, "ani": 82.5305, "matched_fragments": 1424, "total_fragments": 3170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia domus", "strain": "strain=LMG 31832", "accession": "GCA_905220705.1", "taxid": 2793075, "species_taxid": 2793075, "relation_to_type": "type", "validated": true, "ani": 81.7042, "matched_fragments": 1344, "total_fragments": 3170, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_904848645.1", "gtdb_species": "s__Paraburkholderia sabiae", "ani": 100.0, "matched_fragments": 3165, "total_fragments": 3170, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_007995085.1", "gtdb_species": "s__Paraburkholderia azotifigens", "ani": 91.7723, "matched_fragments": 2400, "total_fragments": 3170, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.91", "min_intra_species_ani": "98.91", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_017104565.1", "gtdb_species": "s__Paraburkholderia sp017104565", "ani": 90.67, "matched_fragments": 2260, "total_fragments": 3170, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000020045.1", "gtdb_species": "s__Paraburkholderia phymatum", "ani": 89.1214, "matched_fragments": 2115, "total_fragments": 3170, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002902925.1", "gtdb_species": "s__Paraburkholderia terrae", "ani": 88.1901, "matched_fragments": 2213, "total_fragments": 3170, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.2599, "mean_intra_species_ani": "98.84", "min_intra_species_ani": "97.67", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.83", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_013426895.1", "gtdb_species": "s__Paraburkholderia sp013426895", "ani": 88.1326, "matched_fragments": 2213, "total_fragments": 3170, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017104715.1", "gtdb_species": "s__Paraburkholderia sp017104715", "ani": 87.9413, "matched_fragments": 2157, "total_fragments": 3170, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003121405.1", "gtdb_species": "s__Paraburkholderia sp003121405", "ani": 87.3793, "matched_fragments": 1947, "total_fragments": 3170, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900007165.1", "gtdb_species": "s__Paraburkholderia piptadeniae", "ani": 87.0916, "matched_fragments": 1869, "total_fragments": 3170, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001319865.1", "gtdb_species": "s__Paraburkholderia sp001319865", "ani": 86.7917, "matched_fragments": 1705, "total_fragments": 3170, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }