{ "type": "genome", "identifier": "GCF_904848665.1", "organism": "Paraburkholderia hiiakae", "title": "Paraburkholderia hiiakae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "LM-UGent", "publication": [ {} ], "properties": { "assembly_accession": "GCF_904848665.1", "bioproject": "PRJNA224116", "biosample": "SAMEA7384721", "wgs_master": "CAJHCQ000000000.1", "refseq_category": "reference genome", "taxid": "1081782", "species_taxid": "1081782", "organism_name": "Paraburkholderia hiiakae", "infraspecific_name": "strain=LMG 27952", "isolate": "LMG 27952", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/11/21", "asm_name": "LMG 27952", "asm_submitter": "LM-UGent", "gbrs_paired_asm": "GCA_904848665.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/904/848/665/GCF_904848665.1_LMG_27952", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8723317", "genome_size_ungapped": "8723317", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "64", "contig_count": "64", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_904848665.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "7823", "protein_coding_gene_count": "7615", "non_coding_gene_count": "69", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-11-21", "dateModified": "2020-11-21", "datePublished": "2020-11-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Paraburkholderia hiiakae" ], "sample_taxid": [ "1081782" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "2.421 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8723317", "Number of Sequences": "64", "Longest Sequences (bp)": "905301", "N50 (bp)": "300440", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.8", "Number of CDSs": "7739", "Average Protein Length": "323.3", "Coding Ratio (%)": "86.0", "Number of rRNAs": "1", "Number of tRNAs": "65", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paraburkholderia hiiakae", "strain": "strain=LMG 27952", "accession": "GCA_904848665.1", "taxid": 1081782, "species_taxid": 1081782, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2874, "total_fragments": 2876, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Paraburkholderia acidiphila", "strain": "strain=7Q-K02", "accession": "GCA_009789655.1", "taxid": 2571747, "species_taxid": 2571747, "relation_to_type": "type", "validated": true, "ani": 92.9599, "matched_fragments": 2143, "total_fragments": 2876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia nodosa", "strain": "strain=DSM 21604", "accession": "GCA_000519185.1", "taxid": 392320, "species_taxid": 392320, "relation_to_type": "type", "validated": true, "ani": 92.0737, "matched_fragments": 2057, "total_fragments": 2876, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia guartelaensis", "strain": "strain=CNPSo 3008", "accession": "GCA_004353905.1", "taxid": 2546446, "species_taxid": 2546446, "relation_to_type": "type", "validated": true, "ani": 91.7012, "matched_fragments": 2131, "total_fragments": 2876, "ani_threshold": 95, "status": "below_threshold" }, { 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