{ "type": "genome", "identifier": "GCF_905120465.1", "organism": "Campylobacter majalis", "title": "Campylobacter majalis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "LM-UGent", "publication": [ {} ], "properties": { "assembly_accession": "GCF_905120465.1", "bioproject": "PRJNA224116", "biosample": "SAMEA7616701", "wgs_master": "CAJHOF000000000.1", "refseq_category": "reference genome", "taxid": "2790656", "species_taxid": "2790656", "organism_name": "Campylobacter majalis", "infraspecific_name": "strain=LMG 7974", "isolate": "LMG 7974", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/11/18", "asm_name": "LMG 7974", "asm_submitter": "LM-UGent", "gbrs_paired_asm": "GCA_905120465.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/905/120/465/GCF_905120465.1_LMG_7974", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1945429", "genome_size_ungapped": "1945429", "gc_percent": "34.000000", "replicon_count": "0", "scaffold_count": "59", "contig_count": "59", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-08", "total_gene_count": "1999", "protein_coding_gene_count": "1916", "non_coding_gene_count": "45", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-11-18", "dateModified": "2021-11-18", "datePublished": "2021-11-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Campylobacter majalis" ], "sample_taxid": [ "2790656" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom" ], "sample_host_location_id": [], "data_size": "0.538 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1945429", "Number of Sequences": "59", "Longest Sequences (bp)": "205642", "N50 (bp)": "115793", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "33.8", "Number of CDSs": "1903", "Average Protein Length": "297.2", "Coding Ratio (%)": "87.2", "Number of rRNAs": "2", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Campylobacter mucosalis", "strain": "strain=ATCC 43264", "accession": "GCA_012978755.1", "taxid": 202, "species_taxid": 202, "relation_to_type": "type", "validated": true, "ani": 77.9067, "matched_fragments": 178, "total_fragments": 623, "ani_threshold": 95, "status": 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"strain": "strain=ATCC 33237", "accession": "GCA_001298465.1", "taxid": 199, "species_taxid": 199, "relation_to_type": "suspected-type", "validated": true, "ani": 77.2817, "matched_fragments": 129, "total_fragments": 623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter anatolicus", "strain": "strain=faydin-G140", "accession": "GCA_018145655.1", "taxid": 2829105, "species_taxid": 2829105, "relation_to_type": "type", "validated": true, "ani": 77.2619, "matched_fragments": 143, "total_fragments": 623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter lanienae", "strain": "strain=NCTC 13004", "accession": "GCA_002139935.1", "taxid": 75658, "species_taxid": 75658, "relation_to_type": "type", "validated": true, "ani": 77.0309, "matched_fragments": 65, "total_fragments": 623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter geochelonis", "strain": "strain=RC20", "accession": "GCA_900063025.1", "taxid": 1780362, "species_taxid": 1780362, "relation_to_type": "type", "validated": true, "ani": 76.1149, "matched_fragments": 98, "total_fragments": 623, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter geochelonis", "strain": "strain=LMG 29375", "accession": "GCA_013201685.1", "taxid": 1780362, "species_taxid": 1780362, "relation_to_type": "type", "validated": true, "ani": 76.0728, "matched_fragments": 102, "total_fragments": 623, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_013372205.1", "gtdb_species": "s__Campylobacter_A mucosalis", "ani": 77.8669, "matched_fragments": 203, "total_fragments": 623, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": 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