{
    "type": "genome",
    "identifier": "GCF_905220705.1",
    "organism": "Paraburkholderia domus",
    "title": "Paraburkholderia domus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "GHENT UNIVERSITY",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_905220705.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA7983940",
        "wgs_master": "CAJNAT000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2793075",
        "species_taxid": "2793075",
        "organism_name": "Paraburkholderia domus",
        "infraspecific_name": "strain=LMG 31832",
        "isolate": "LMG 31832",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/04/15",
        "asm_name": "LMG 31832",
        "asm_submitter": "GHENT UNIVERSITY",
        "gbrs_paired_asm": "GCA_905220705.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/905/220/705/GCF_905220705.1_LMG_31832",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "8745694",
        "genome_size_ungapped": "8745694",
        "gc_percent": "61.500000",
        "replicon_count": "0",
        "scaffold_count": "99",
        "contig_count": "99",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_905220705.1-RS_2024_12_11",
        "annotation_date": "2024-12-11",
        "total_gene_count": "7875",
        "protein_coding_gene_count": "7598",
        "non_coding_gene_count": "60",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-04-15",
    "dateModified": "2021-04-15",
    "datePublished": "2021-04-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paraburkholderia domus"
        ],
        "sample_taxid": [
            "2793075"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Belgium"
        ],
        "sample_host_location_id": [],
        "data_size": "2.452 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "8745694",
        "Number of Sequences": "99",
        "Longest Sequences (bp)": "1156680",
        "N50 (bp)": "229750",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "61.3",
        "Number of CDSs": "7739",
        "Average Protein Length": "318.9",
        "Coding Ratio (%)": "84.7",
        "Number of rRNAs": "1",
        "Number of tRNAs": "57",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Paraburkholderia domus",
                "strain": "strain=LMG 31832",
                "accession": "GCA_905220705.1",
                "taxid": 2793075,
                "species_taxid": 2793075,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2865,
                "total_fragments": 2869,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Paraburkholderia solitsugae",
                "strain": "strain=1N",
                "accession": "GCA_013177695.1",
                "taxid": 2675748,
                "species_taxid": 2675748,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.7534,
                "matched_fragments": 2008,
                "total_fragments": 2869,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia elongata",
                "strain": "strain=5N",
                "accession": "GCA_013177735.1",
                "taxid": 2675747,
                "species_taxid": 2675747,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.0324,
                "matched_fragments": 1907,
                "total_fragments": 2869,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia polaris",
                "strain": "strain=RP-4-7",
                "accession": "GCA_012927345.1",
                "taxid": 2728848,
                "species_taxid": 2728848,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.9959,
                "matched_fragments": 2024,
                "total_fragments": 2869,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia madseniana",
                "strain": "strain=RP11",
                "accession": "GCA_009690905.1",
                "taxid": 2599607,
                "species_taxid": 2599607,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.6809,
                "matched_fragments": 1939,
                "total_fragments": 2869,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia haematera",
                "strain": "strain=LMG 31837",
                "accession": "GCA_905220975.1",
                "taxid": 2793077,
                "species_taxid": 2793077,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.6092,
                "matched_fragments": 1970,
                "total_fragments": 2869,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia nemoris",
                "strain": "strain=LMG 31836",
                "accession": "GCA_905221015.1",
                "taxid": 2793076,
                "species_taxid": 2793076,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.4195,
                "matched_fragments": 1982,
                "total_fragments": 2869,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia aspalathi",
                "strain": "strain=LMG 27731",
                "accession": "GCA_900116445.1",
                "taxid": 1324617,
                "species_taxid": 1324617,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.3292,
                "matched_fragments": 2011,
                "total_fragments": 2869,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia caffeinilytica",
                "strain": "strain=CF1",
                "accession": "GCA_003368325.1",
                "taxid": 1761016,
                "species_taxid": 1761016,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.1354,
                "matched_fragments": 1842,
                "total_fragments": 2869,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia agricolaris",
                "strain": "strain=BaQS159",
                "accession": "GCA_009455635.1",
                "taxid": 2152888,
                "species_taxid": 2152888,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.2902,
                "matched_fragments": 1920,
                "total_fragments": 2869,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia fungorum",
                "strain": "strain=ATCC BAA-463",
                "accession": "GCA_000961515.1",
                "taxid": 134537,
                "species_taxid": 134537,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 88.8815,
                "matched_fragments": 1948,
                "total_fragments": 2869,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia kirstenboschensis",
                "strain": "strain=KB15",
                "accession": "GCA_001636975.1",
                "taxid": 1245436,
                "species_taxid": 1245436,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.0184,
                "matched_fragments": 1200,
                "total_fragments": 2869,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia podalyriae",
                "strain": "strain=WC7.3b",
                "accession": "GCA_014397785.1",
                "taxid": 1938811,
                "species_taxid": 1938811,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.7327,
                "matched_fragments": 1433,
                "total_fragments": 2869,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_905220835.1",
                "gtdb_species": "s__Paraburkholderia sp905220835",
                "ani": 99.561,
                "matched_fragments": 2540,
                "total_fragments": 2869,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.73",
                "min_intra_species_ani": "99.56",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 13,
                "status": "conclusive"
            },
            {
                "accession": "GCF_013177695.1",
                "gtdb_species": "s__Paraburkholderia sp013177695",
                "ani": 91.7184,
                "matched_fragments": 2013,
                "total_fragments": 2869,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900142905.1",
                "gtdb_species": "s__Paraburkholderia sp900142905",
                "ani": 91.6695,
                "matched_fragments": 2152,
                "total_fragments": 2869,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.29",
                "min_intra_species_ani": "98.24",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_013177735.1",
                "gtdb_species": "s__Paraburkholderia sp013177735",
                "ani": 90.9926,
                "matched_fragments": 1912,
                "total_fragments": 2869,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_012927345.1",
                "gtdb_species": "s__Paraburkholderia sp012927345",
                "ani": 90.988,
                "matched_fragments": 2025,
                "total_fragments": 2869,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900230185.1",
                "gtdb_species": "s__Paraburkholderia sp900230185",
                "ani": 90.7049,
                "matched_fragments": 2105,
                "total_fragments": 2869,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009690905.1",
                "gtdb_species": "s__Paraburkholderia madseniana",
                "ani": 90.68,
                "matched_fragments": 1939,
                "total_fragments": 2869,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.82",
                "min_intra_species_ani": "98.82",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_905220975.1",
                "gtdb_species": "s__Paraburkholderia sp905220975",
                "ani": 90.5969,
                "matched_fragments": 1972,
                "total_fragments": 2869,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001634365.1",
                "gtdb_species": "s__Paraburkholderia sp001634365",
                "ani": 90.4064,
                "matched_fragments": 1725,
                "total_fragments": 2869,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900116445.1",
                "gtdb_species": "s__Paraburkholderia aspalathi",
                "ani": 90.3437,
                "matched_fragments": 2009,
                "total_fragments": 2869,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.47",
                "min_intra_species_ani": "95.19",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.72",
                "num_clustered_genomes": 20,
                "status": "-"
            },
            {
                "accession": "GCF_003610295.1",
                "gtdb_species": "s__Paraburkholderia sp003610295",
                "ani": 90.0433,
                "matched_fragments": 1958,
                "total_fragments": 2869,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003610895.1",
                "gtdb_species": "s__Paraburkholderia fungorum_B",
                "ani": 89.2356,
                "matched_fragments": 1946,
                "total_fragments": 2869,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.206,
        "cell_length": 0.138,
        "doubling_h": 0.0,
        "growth_tmp": 29.45,
        "optimum_tmp": 29.643,
        "optimum_ph": 6.11,
        "genome_size": 7672919.331,
        "gc_content": 62.985,
        "coding_genes": 7196.441,
        "rRNA16S_genes": 5.571,
        "tRNA_genes": 61.73,
        "gram_stain": 0.0,
        "sporulation": 0.035,
        "motility": 0.689,
        "range_salinity": 0.5,
        "facultative_respiration": 0.029,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.97,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.945,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.054,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Paraburkholderia",
        "domus"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}