{ "type": "genome", "identifier": "GCF_905397375.1", "organism": "Ralstonia mannitolilytica", "title": "Ralstonia mannitolilytica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "LM-UGent", "publication": [ {} ], "properties": { "assembly_accession": "GCF_905397375.1", "bioproject": "PRJNA224116", "biosample": "SAMEA8420087", "wgs_master": "CAJPVG000000000.1", "refseq_category": "na", "taxid": "105219", "species_taxid": "105219", "organism_name": "Ralstonia mannitolilytica", "infraspecific_name": "strain=LMG 6866", "isolate": "LMG 6866", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/15", "asm_name": "LMG 6866", "asm_submitter": "LM-UGent", "gbrs_paired_asm": "GCA_905397375.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/905/397/375/GCF_905397375.1_LMG_6866", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4823626", "genome_size_ungapped": "4823626", "gc_percent": "66.000000", "replicon_count": "0", "scaffold_count": "36", "contig_count": "36", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_905397375.1-RS_2024_04_26", "annotation_date": "2024-04-26", "total_gene_count": "4552", "protein_coding_gene_count": "4423", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-15", "dateModified": "2021-04-15", "datePublished": "2021-04-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Ralstonia mannitolilytica" ], "sample_taxid": [ "105219" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom" ], "sample_host_location_id": [], "data_size": "1.326 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4823626", "Number of Sequences": "36", "Longest Sequences (bp)": "1247776", "N50 (bp)": "342660", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.8", "Number of CDSs": "4483", "Average Protein Length": "321.0", "Coding Ratio (%)": "89.5", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ralstonia mannitolilytica", "strain": "strain=LMG 6866", "accession": "GCA_905397375.1", "taxid": 105219, "species_taxid": 105219, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1588, "total_fragments": 1591, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Ralstonia pickettii", "strain": "strain=NCTC11149", "accession": "GCA_900455835.1", "taxid": 329, "species_taxid": 329, "relation_to_type": "type", "validated": true, "ani": 87.7446, "matched_fragments": 1224, "total_fragments": 1591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ralstonia pickettii", "strain": "strain=NBRC 102503", "accession": "GCA_001544155.1", "taxid": 329, "species_taxid": 329, "relation_to_type": "type", "validated": true, "ani": 87.6906, "matched_fragments": 1217, "total_fragments": 1591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ralstonia pickettii", "strain": "strain=FDAARGOS_1535", "accession": "GCA_020341455.1", "taxid": 329, "species_taxid": 329, "relation_to_type": "type", "validated": true, "ani": 87.6404, "matched_fragments": 1250, "total_fragments": 1591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ralstonia pickettii", "strain": "strain=ATCC 27511", "accession": "GCA_000743455.1", "taxid": 329, "species_taxid": 329, "relation_to_type": "type", "validated": true, "ani": 87.6287, "matched_fragments": 1244, "total_fragments": 1591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ralstonia insidiosa", "strain": "strain=CCUG 46789", "accession": "GCA_008801405.1", "taxid": 190721, "species_taxid": 190721, "relation_to_type": "type", "validated": true, "ani": 86.7223, "matched_fragments": 1251, "total_fragments": 1591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ralstonia pseudosolanacearum", "strain": "strain=LMG 9673", "accession": "GCA_919586305.1", "taxid": 1310165, "species_taxid": 1310165, "relation_to_type": "type", "validated": true, "ani": 85.6227, "matched_fragments": 1036, "total_fragments": 1591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ralstonia pseudosolanacearum", "strain": "strain=LMG 9673", "accession": "GCA_024925465.1", "taxid": 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1591, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000020205.1", "gtdb_species": "s__Ralstonia pickettii_B", "ani": 88.0035, "matched_fragments": 1243, "total_fragments": 1591, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.08", "min_intra_species_ani": "96.31", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.83", "num_clustered_genomes": 22, "status": "-" }, { "accession": "GCF_900115545.1", "gtdb_species": "s__Ralstonia sp900115545", "ani": 87.6979, "matched_fragments": 1276, "total_fragments": 1591, "gtdb_taxonomy": 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