{ "type": "genome", "identifier": "GCF_905397395.1", "organism": "Cupriavidus campinensis", "title": "Cupriavidus campinensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "LM-UGent", "publication": [ {} ], "properties": { "assembly_accession": "GCF_905397395.1", "bioproject": "PRJNA224116", "biosample": "SAMEA8420083", "wgs_master": "CAJPVH000000000.1", "refseq_category": "na", "taxid": "151783", "species_taxid": "151783", "organism_name": "Cupriavidus campinensis", "infraspecific_name": "strain=LMG 19282", "isolate": "LMG 19282", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/15", "asm_name": "LMG 19282", "asm_submitter": "LM-UGent", "gbrs_paired_asm": "GCA_905397395.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/905/397/395/GCF_905397395.1_LMG_19282", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6103936", "genome_size_ungapped": "6103936", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "158", "contig_count": "158", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_905397395.1-RS_2024_12_23", "annotation_date": "2024-12-23", "total_gene_count": "5688", "protein_coding_gene_count": "5510", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-15", "dateModified": "2021-04-15", "datePublished": "2021-04-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Cupriavidus campinensis" ], "sample_taxid": [ "151783" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Belgium" ], "sample_host_location_id": [], "data_size": "1.682 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6103936", "Number of Sequences": "158", "Longest Sequences (bp)": "351861", "N50 (bp)": "91247", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.6", "Number of CDSs": "5449", "Average Protein Length": "323.8", "Coding Ratio (%)": "86.7", "Number of rRNAs": "3", "Number of tRNAs": "59", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cupriavidus campinensis", "strain": "strain=LMG 19282", "accession": "GCA_905397395.1", "taxid": 151783, "species_taxid": 151783, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1939, "total_fragments": 1957, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cupriavidus agavae", "strain": "strain=ASC-9842", "accession": "GCA_004217045.1", "taxid": 1001822, "species_taxid": 1001822, "relation_to_type": "type", "validated": true, "ani": 85.5475, "matched_fragments": 1292, "total_fragments": 1957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus nantongensis", "strain": "strain=X1", "accession": "GCA_001598055.1", "taxid": 1796606, "species_taxid": 1796606, "relation_to_type": "type", "validated": true, "ani": 84.466, "matched_fragments": 1204, "total_fragments": 1957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus metallidurans", "strain": "strain=CH34", "accession": "GCA_000196015.1", "taxid": 119219, "species_taxid": 119219, "relation_to_type": "type", "validated": true, "ani": 84.1369, "matched_fragments": 1170, "total_fragments": 1957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus alkaliphilus", "strain": "strain=ASC-732", "accession": "GCA_900094595.1", "taxid": 942866, "species_taxid": 942866, "relation_to_type": "type", "validated": true, "ani": 83.9939, "matched_fragments": 1175, "total_fragments": 1957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus oxalaticus", "strain": "strain=Ox1", "accession": "GCA_016894385.1", "taxid": 96344, "species_taxid": 96344, "relation_to_type": "type", "validated": true, "ani": 83.9169, "matched_fragments": 1160, "total_fragments": 1957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus neocaledonicus", "strain": "strain=STM6070", "accession": "GCA_000372525.1", "taxid": 1040979, "species_taxid": 1040979, "relation_to_type": "type", "validated": true, "ani": 83.8959, "matched_fragments": 1171, "total_fragments": 1957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus taiwanensis", "strain": "strain=LMG 19424", "accession": "GCA_000069785.1", "taxid": 164546, "species_taxid": 164546, "relation_to_type": "suspected-type", "validated": true, "ani": 83.8552, "matched_fragments": 1171, "total_fragments": 1957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus pauculus", "strain": "strain=CCUG 12507", "accession": "GCA_008801835.1", "taxid": 82633, "species_taxid": 82633, "relation_to_type": "type", "validated": true, "ani": 83.8485, "matched_fragments": 1270, "total_fragments": 1957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus pauculus", "strain": "strain=FDAARGOS_1472", "accession": "GCA_019931045.1", "taxid": 82633, "species_taxid": 82633, "relation_to_type": "type", "validated": true, "ani": 83.843, "matched_fragments": 1278, "total_fragments": 1957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus oxalaticus", "strain": "strain=NBRC 13593", "accession": "GCA_001592245.1", "taxid": 96344, "species_taxid": 96344, "relation_to_type": "type", "validated": true, "ani": 83.8372, "matched_fragments": 1160, "total_fragments": 1957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus plantarum", "strain": "strain=LMG 26296", "accession": "GCA_905397285.1", "taxid": 942865, "species_taxid": 942865, "relation_to_type": "type", "validated": true, "ani": 82.8879, "matched_fragments": 1178, "total_fragments": 1957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus numazuensis", "strain": "strain=LMG 26411", "accession": "GCA_905397435.1", "taxid": 221992, "species_taxid": 221992, "relation_to_type": "type", "validated": true, "ani": 82.8793, "matched_fragments": 1153, "total_fragments": 1957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus malaysiensis", "strain": "strain=USMAA1020", "accession": "GCA_001854325.1", "taxid": 367825, "species_taxid": 367825, "relation_to_type": "type", "validated": true, "ani": 82.5273, "matched_fragments": 1124, "total_fragments": 1957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia acidipaludis", "strain": "strain=NBRC 101816", "accession": "GCA_000684975.1", "taxid": 660537, "species_taxid": 660537, "relation_to_type": "type", "validated": true, "ani": 78.3317, "matched_fragments": 529, "total_fragments": 1957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia pseudomultivorans", "strain": "", "accession": "GCA_902499075.1", "taxid": 1207504, "species_taxid": 1207504, "relation_to_type": "suspected-type", "validated": true, "ani": 78.3146, "matched_fragments": 585, "total_fragments": 1957, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia solisilvae", "strain": "strain=JCM 31607", "accession": "GCA_024753215.1", "taxid": 1811225, "species_taxid": 1811225, "relation_to_type": "type", "validated": true, "ani": 78.1305, "matched_fragments": 479, 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