{ "type": "genome", "identifier": "GCF_910573815.1", "organism": "Barrientosiimonas humi", "title": "Barrientosiimonas humi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "UNIVERSITI PUTRA MALAYSIA", "publication": [ {} ], "properties": { "assembly_accession": "GCF_910573815.1", "bioproject": "PRJNA224116", "biosample": "SAMEA8751438", "wgs_master": "CAJTBP000000000.1", "refseq_category": "na", "taxid": "999931", "species_taxid": "999931", "organism_name": "Barrientosiimonas humi", "infraspecific_name": "strain=39T", "isolate": "39T", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/07/07", "asm_name": "Bh_39T", "asm_submitter": "UNIVERSITI PUTRA MALAYSIA", "gbrs_paired_asm": "GCA_910573815.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/910/573/815/GCF_910573815.1_Bh_39T", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3622728", "genome_size_ungapped": "3622728", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_910573815.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "3390", "protein_coding_gene_count": "3319", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-07-07", "dateModified": "2021-07-07", "datePublished": "2021-07-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Barrientosiimonas humi" ], "sample_taxid": [ "999931" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica" ], "sample_host_location_id": [], "data_size": "0.950 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3622728", "Number of Sequences": "2", "Longest Sequences (bp)": "3615725", "N50 (bp)": "3615725", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.4", "Number of CDSs": "3393", "Average Protein Length": "326.7", "Coding Ratio (%)": "91.8", "Number of rRNAs": "6", "Number of tRNAs": "57", "Number of CRISPRs": "7" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Barrientosiimonas humi", "strain": "strain=type strain: 39", "accession": "GCA_910573815.1", "taxid": 999931, "species_taxid": 999931, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1205, "total_fragments": 1207, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Barrientosiimonas humi", "strain": "strain=DSM 24617", "accession": "GCA_006716095.1", "taxid": 999931, "species_taxid": 999931, "relation_to_type": "type", "validated": true, "ani": 99.9975, "matched_fragments": 1197, "total_fragments": 1207, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Luteipulveratus halotolerans", "strain": "strain=C296001", "accession": "GCA_001247745.1", "taxid": 1631356, "species_taxid": 1631356, "relation_to_type": "type", "validated": true, "ani": 81.1546, "matched_fragments": 758, "total_fragments": 1207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteipulveratus mongoliensis", "strain": "strain=MN07-A0370", "accession": "GCA_001190945.1", "taxid": 571913, "species_taxid": 571913, "relation_to_type": "type", "validated": true, "ani": 80.4169, "matched_fragments": 679, "total_fragments": 1207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flexivirga aerilata", "strain": "strain=ID2601S", "accession": "GCA_013002715.1", "taxid": 1656889, "species_taxid": 1656889, "relation_to_type": "type", "validated": true, "ani": 80.232, "matched_fragments": 636, "total_fragments": 1207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flexivirga oryzae", "strain": "strain=DSM 105369", "accession": "GCA_014190805.1", "taxid": 1794944, "species_taxid": 1794944, "relation_to_type": "type", "validated": true, "ani": 79.5875, "matched_fragments": 531, "total_fragments": 1207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedococcus dokdonensis", "strain": "strain=DSM 22329", "accession": "GCA_900104525.1", "taxid": 443156, "species_taxid": 443156, "relation_to_type": "type", "validated": true, "ani": 79.4826, "matched_fragments": 516, "total_fragments": 1207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arsenicicoccus piscis", "strain": "strain=DSM 22760", "accession": "GCA_022568835.1", "taxid": 673954, "species_taxid": 673954, "relation_to_type": "type", "validated": true, "ani": 79.2154, "matched_fragments": 465, "total_fragments": 1207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flexivirga endophytica", "strain": "strain=KCTC 39536", "accession": "GCA_014652735.1", "taxid": 1849103, "species_taxid": 1849103, "relation_to_type": "type", "validated": true, "ani": 79.0551, "matched_fragments": 532, "total_fragments": 1207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinimicrobium humiphilum", "strain": "strain=DSM 12362", "accession": "GCA_006716885.1", "taxid": 125288, "species_taxid": 125288, "relation_to_type": "type", "validated": true, "ani": 79.0263, "matched_fragments": 458, "total_fragments": 1207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arsenicicoccus bolidensis", "strain": "strain=DSM 15745", "accession": "GCA_000426385.1", "taxid": 229480, "species_taxid": 229480, "relation_to_type": "type", "validated": true, "ani": 78.9151, "matched_fragments": 476, "total_fragments": 1207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phycicoccus mangrovi", "strain": "strain=KQZ13P-1", "accession": "GCA_018729305.1", "taxid": 2840470, "species_taxid": 2840470, "relation_to_type": "type", "validated": true, "ani": 78.816, "matched_fragments": 556, "total_fragments": 1207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinimicrobium tianjinense", "strain": "strain=CGMCC 1.12160", "accession": "GCA_014636495.1", "taxid": 1195761, "species_taxid": 1195761, "relation_to_type": "type", "validated": true, "ani": 78.807, "matched_fragments": 425, "total_fragments": 1207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phycicoccus jejuensis", "strain": "strain=NRRL B-24460", "accession": "GCA_000720925.1", "taxid": 367299, "species_taxid": 367299, "relation_to_type": "type", "validated": true, "ani": 78.7439, "matched_fragments": 548, "total_fragments": 1207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janibacter melonis", "strain": "strain=NBRC107855", "accession": "GCA_020567375.1", "taxid": 262209, "species_taxid": 262209, "relation_to_type": "type", "validated": true, "ani": 78.7077, "matched_fragments": 495, "total_fragments": 1207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas citrea", "strain": "strain=Ao-9", "accession": "GCA_009829685.1", "taxid": 1909423, "species_taxid": 1909423, "relation_to_type": "type", "validated": true, "ani": 77.2226, "matched_fragments": 310, "total_fragments": 1207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Peterkaempfera griseoplana", "strain": "strain=NRRL B-3064", "accession": "GCA_001418575.1", "taxid": 66896, "species_taxid": 66896, "relation_to_type": "type", "validated": true, "ani": 77.0239, "matched_fragments": 348, "total_fragments": 1207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Occultella kanbiaonis", "strain": "strain=HY164", "accession": "GCA_009708215.1", "taxid": 2675754, "species_taxid": 2675754, "relation_to_type": "type", "validated": true, "ani": 76.8916, "matched_fragments": 340, "total_fragments": 1207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea rhizosphaerae", "strain": "strain=CGMCC 4.7431", "accession": "GCA_019396405.1", "taxid": 2665663, "species_taxid": 2665663, "relation_to_type": "type", "validated": true, "ani": 76.8683, "matched_fragments": 320, "total_fragments": 1207, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea roseoviolacea subsp. carminata", "strain": "strain=DSM 44170", "accession": "GCA_024172185.1", "taxid": 160689, "species_taxid": 103837, "relation_to_type": "type", "validated": true, "ani": 76.7248, "matched_fragments": 529, "total_fragments": 1207, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_006716095.1", "gtdb_species": "s__Barrientosiimonas humi", "ani": 99.9975, "matched_fragments": 1197, "total_fragments": 1207, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Barrientosiimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_001247745.1", "gtdb_species": "s__Luteipulveratus halotolerans", "ani": 81.1939, "matched_fragments": 753, "total_fragments": 1207, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Luteipulveratus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001190945.1", "gtdb_species": "s__Luteipulveratus mongoliensis", "ani": 80.3802, "matched_fragments": 680, "total_fragments": 1207, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Luteipulveratus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013002715.1", "gtdb_species": "s__Flexivirga aerilata", "ani": 80.2409, "matched_fragments": 635, "total_fragments": 1207, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Flexivirga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003386865.1", "gtdb_species": "s__Yimella indica", "ani": 80.041, "matched_fragments": 540, "total_fragments": 1207, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Yimella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006716205.1", "gtdb_species": "s__Oryzihumus leptocrescens", "ani": 79.9007, "matched_fragments": 546, "total_fragments": 1207, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Oryzihumus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900111375.1", "gtdb_species": "s__Pedococcus cremeus", "ani": 79.623, "matched_fragments": 549, "total_fragments": 1207, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Pedococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.41", "min_intra_species_ani": "95.41", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014190805.1", "gtdb_species": "s__Flexivirga oryzae", "ani": 79.5974, "matched_fragments": 534, "total_fragments": 1207, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Flexivirga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013410455.1", "gtdb_species": "s__Allobranchiibius huperziae", "ani": 79.5111, "matched_fragments": 541, "total_fragments": 1207, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Allobranchiibius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.04", "min_intra_species_ani": "97.04", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900104525.1", "gtdb_species": "s__Pedococcus dokdonensis", "ani": 79.4012, "matched_fragments": 525, "total_fragments": 1207, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Pedococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017654605.1", "gtdb_species": "s__Yimella sp014530045", "ani": 79.3354, "matched_fragments": 444, "total_fragments": 1207, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Yimella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.79", "min_intra_species_ani": "97.58", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_006715095.1", "gtdb_species": "s__Yimella lutea", "ani": 79.2971, "matched_fragments": 465, "total_fragments": 1207, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Yimella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.40", "min_intra_species_ani": "98.40", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_006715875.1", "gtdb_species": "s__Terrabacter sp006715875", "ani": 79.2397, "matched_fragments": 519, "total_fragments": 1207, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Terrabacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014640635.1", "gtdb_species": "s__Flexivirga endophytica", "ani": 79.0579, "matched_fragments": 532, "total_fragments": 1207, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Flexivirga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000383675.1", "gtdb_species": "s__Terrabacter sp000383675", "ani": 79.021, "matched_fragments": 513, "total_fragments": 1207, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Terrabacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013201035.1", "gtdb_species": "s__Phycicoccus sp013201035", "ani": 78.8597, "matched_fragments": 569, "total_fragments": 1207, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Phycicoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006716915.1", "gtdb_species": "s__Terrabacter sp006716915", "ani": 78.8072, "matched_fragments": 510, "total_fragments": 1207, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Terrabacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000720925.1", "gtdb_species": "s__Phycicoccus jejuensis", "ani": 78.7165, "matched_fragments": 552, "total_fragments": 1207, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Phycicoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.36", "min_intra_species_ani": "95.39", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.87", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_004153545.1", "gtdb_species": "s__Serinicoccus sediminis", "ani": 78.6206, "matched_fragments": 450, "total_fragments": 1207, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Serinicoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001956915.1", "gtdb_species": "s__Monashia flava", "ani": 78.5804, "matched_fragments": 503, "total_fragments": 1207, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Monashia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001418575.1", "gtdb_species": "s__Streptomyces_D griseoplanus", "ani": 77.0095, "matched_fragments": 351, "total_fragments": 1207, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.502, "cell_length": 0.096, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": 32.0, "optimum_ph": 8.0, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Barrientosiimonas", "humi" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }