{ "type": "genome", "identifier": "GCF_913566895.1", "organism": "Listeria ilorinensis", "title": "Listeria ilorinensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institut Pasteur", "publication": [ {} ], "properties": { "assembly_accession": "GCF_913566895.1", "bioproject": "PRJNA224116", "biosample": "SAMEA9541095", "wgs_master": "CAJYCN000000000.1", "refseq_category": "reference genome", "taxid": "2867439", "species_taxid": "2867439", "organism_name": "Listeria ilorinensis", "infraspecific_name": "na", "isolate": "CLIP 2019/01311", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/02/17", "asm_name": "201901311", "asm_submitter": "Institut Pasteur", "gbrs_paired_asm": "GCA_913566895.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/913/566/895/GCF_913566895.1_201901311", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3031311", "genome_size_ungapped": "3031311", "gc_percent": "41.500000", "replicon_count": "0", "scaffold_count": "57", "contig_count": "57", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_913566895.1-RS_2024_07_02", "annotation_date": "2024-07-02", "total_gene_count": "3006", "protein_coding_gene_count": "2898", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-02-17", "dateModified": "2022-02-17", "datePublished": "2022-02-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Listeria ilorinensis" ], "sample_taxid": [ "2867439" ], "sample_host_organism": [ "NA" ], "sample_host_organism_id": [], "sample_host_disease": [ "not applicable" ], "sample_host_disease_id": [], "sample_host_location": [ "Nigeria" ], "sample_host_location_id": [], "data_size": "0.863 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3031311", "Number of Sequences": "57", "Longest Sequences (bp)": "352412", "N50 (bp)": "154178", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.3", "Number of CDSs": "2927", "Average Protein Length": "302.3", "Coding Ratio (%)": "87.6", "Number of rRNAs": "1", "Number of tRNAs": "54", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Listeria ilorinensis", "strain": "", "accession": "GCA_913566895.1", "taxid": 2867439, "species_taxid": 2867439, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 990, "total_fragments": 991, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Listeria costaricensis", "strain": "", "accession": "GCA_900183385.1", "taxid": 2026604, "species_taxid": 2026604, "relation_to_type": "type", "validated": true, "ani": 85.1962, "matched_fragments": 771, "total_fragments": 991, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Listeria fleischmannii subsp. fleischmannii", "strain": "strain=LU2006-1", "accession": "GCA_000344175.1", "taxid": 1671902, "species_taxid": 1069827, "relation_to_type": "type", "validated": true, "ani": 78.1228, "matched_fragments": 173, "total_fragments": 991, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Listeria aquatica", "strain": "strain=FSL S10-1188", "accession": "GCA_000525795.1", "taxid": 1494960, "species_taxid": 1494960, "relation_to_type": "type", "validated": true, "ani": 78.0951, "matched_fragments": 145, "total_fragments": 991, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Listeria 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"strain": "strain=TTU M1-001", "accession": "GCA_000252625.2", "taxid": 1081736, "species_taxid": 1069827, "relation_to_type": "type", "validated": true, "ani": 77.8417, "matched_fragments": 154, "total_fragments": 991, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Listeria seeligeri", "strain": "strain=SLCC3954", "accession": "GCA_000027145.1", "taxid": 1640, "species_taxid": 1640, "relation_to_type": "type", "validated": true, "ani": 77.6377, "matched_fragments": 175, "total_fragments": 991, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Listeria welshimeri", "strain": "strain=SLCC5334", "accession": "GCA_000060285.1", "taxid": 1643, "species_taxid": 1643, "relation_to_type": "type", "validated": true, "ani": 77.6303, "matched_fragments": 173, "total_fragments": 991, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Listeria welshimeri", "strain": "strain=NCTC11857", "accession": "GCA_900187315.1", "taxid": 1643, "species_taxid": 1643, "relation_to_type": "type", "validated": true, "ani": 77.5852, "matched_fragments": 172, "total_fragments": 991, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Listeria monocytogenes", "strain": "strain=2014L-6393", "accession": "GCA_013626145.1", "taxid": 1639, "species_taxid": 1639, "relation_to_type": "claderef", "validated": true, "ani": 77.4497, "matched_fragments": 170, "total_fragments": 991, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Listeria monocytogenes", "strain": "strain=2014L-6256", "accession": "GCA_013625895.1", "taxid": 1639, "species_taxid": 1639, "relation_to_type": "claderef", "validated": true, "ani": 77.4324, "matched_fragments": 191, "total_fragments": 991, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Listeria booriae", "strain": "strain=NCTC13936", "accession": "GCA_900453065.1", "taxid": 1552123, "species_taxid": 1552123, "relation_to_type": "type", "validated": true, "ani": 77.3519, "matched_fragments": 110, "total_fragments": 991, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Listeria rocourtiae", "strain": "strain=FSL F6-920", "accession": "GCA_000525975.1", "taxid": 647910, "species_taxid": 647910, "relation_to_type": "type", "validated": true, "ani": 77.3303, "matched_fragments": 113, "total_fragments": 991, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Listeria booriae", "strain": "strain=FSL A5-0281", "accession": "GCA_000766865.1", "taxid": 1552123, "species_taxid": 1552123, "relation_to_type": "type", "validated": true, "ani": 77.2692, "matched_fragments": 109, "total_fragments": 991, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900183385.1", "gtdb_species": "s__Listeria costaricensis", "ani": 85.1962, "matched_fragments": 771, 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