{ "type": "genome", "identifier": "GCF_914271545.1", "organism": "Cupriavidus respiraculi", "title": "Cupriavidus respiraculi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "LM-UGent", "publication": [ {} ], "properties": { "assembly_accession": "GCF_914271545.1", "bioproject": "PRJNA224116", "biosample": "SAMEA9552241", "wgs_master": "CAJZAH000000000.1", "refseq_category": "reference genome", "taxid": "195930", "species_taxid": "195930", "organism_name": "Cupriavidus respiraculi", "infraspecific_name": "strain=LMG 21510", "isolate": "LMG 21510", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/14", "asm_name": "LMG 21510", "asm_submitter": "LM-UGent", "gbrs_paired_asm": "GCA_914271545.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/914/271/545/GCF_914271545.1_LMG_21510", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5595843", "genome_size_ungapped": "5595843", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "18", "contig_count": "18", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_914271545.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "5117", "protein_coding_gene_count": "5009", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-14", "dateModified": "2021-09-14", "datePublished": "2021-09-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Cupriavidus respiraculi" ], "sample_taxid": [ "195930" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "1.524 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5595843", "Number of Sequences": "18", "Longest Sequences (bp)": "1711770", "N50 (bp)": "1582458", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.8", "Number of CDSs": "5087", "Average Protein Length": "326.5", "Coding Ratio (%)": "89.1", "Number of rRNAs": "3", "Number of tRNAs": "57", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cupriavidus respiraculi", "strain": "strain=LMG 21510", "accession": "GCA_914271545.1", "taxid": 195930, "species_taxid": 195930, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1858, "total_fragments": 1858, "ani_threshold": 95, 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"GCA_000372525.1", "taxid": 1040979, "species_taxid": 1040979, "relation_to_type": "type", "validated": true, "ani": 83.6905, "matched_fragments": 1129, "total_fragments": 1858, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus taiwanensis", "strain": "strain=LMG 19424", "accession": "GCA_000069785.1", "taxid": 164546, "species_taxid": 164546, "relation_to_type": "suspected-type", "validated": true, "ani": 83.6753, "matched_fragments": 1121, "total_fragments": 1858, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus oxalaticus", "strain": "strain=NBRC 13593", "accession": "GCA_001592245.1", "taxid": 96344, "species_taxid": 96344, "relation_to_type": "type", "validated": true, "ani": 83.5964, "matched_fragments": 1083, "total_fragments": 1858, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus lacunae", "strain": "strain=S23", "accession": "GCA_003353055.1", "taxid": 2666307, 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"type", "validated": true, "ani": 78.3704, "matched_fragments": 703, "total_fragments": 1858, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia pallida", "strain": "strain=7MH5", "accession": "GCA_004524855.1", "taxid": 2547399, "species_taxid": 2547399, "relation_to_type": "type", "validated": true, "ani": 78.176, "matched_fragments": 582, "total_fragments": 1858, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia podalyriae", "strain": "strain=WC7.3b", "accession": "GCA_014397785.1", "taxid": 1938811, "species_taxid": 1938811, "relation_to_type": "type", "validated": true, "ani": 78.1266, "matched_fragments": 513, "total_fragments": 1858, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia anthina", "strain": "strain=DSM 16086", "accession": "GCA_016836725.1", "taxid": 179879, "species_taxid": 179879, "relation_to_type": "suspected-type", "validated": true, "ani": 78.0544, 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