{
    "type": "genome",
    "identifier": "GCF_914768025.1",
    "organism": "Snodgrassella gandavensis",
    "title": "Snodgrassella gandavensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Sciensano",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_914768025.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA9570078",
        "wgs_master": "CAJZCE000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2946698",
        "species_taxid": "2946698",
        "organism_name": "Snodgrassella gandavensis",
        "infraspecific_name": "strain=LMG 30236",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/02/17",
        "asm_name": "LMG 30236",
        "asm_submitter": "Sciensano",
        "gbrs_paired_asm": "GCA_914768025.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/914/768/025/GCF_914768025.1_LMG_30236",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2507157",
        "genome_size_ungapped": "2507157",
        "gc_percent": "44.000000",
        "replicon_count": "0",
        "scaffold_count": "45",
        "contig_count": "45",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_914768025.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "2276",
        "protein_coding_gene_count": "2186",
        "non_coding_gene_count": "63",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-02-17",
    "dateModified": "2022-02-17",
    "datePublished": "2022-02-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Snodgrassella gandavensis"
        ],
        "sample_taxid": [
            "2946698"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.706 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2507157",
        "Number of Sequences": "45",
        "Longest Sequences (bp)": "382018",
        "N50 (bp)": "132469",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "43.8",
        "Number of CDSs": "2174",
        "Average Protein Length": "304.2",
        "Coding Ratio (%)": "79.1",
        "Number of rRNAs": "2",
        "Number of tRNAs": "54",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Snodgrassella gandavensis",
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                "accession": "GCA_914768025.1",
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                "species_taxid": 2946698,
                "relation_to_type": "type",
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                "matched_fragments": 813,
                "total_fragments": 813,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Snodgrassella communis",
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                "accession": "GCA_914768045.1",
                "taxid": 2946699,
                "species_taxid": 2946699,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.5077,
                "matched_fragments": 664,
                "total_fragments": 813,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Snodgrassella alvi",
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                "accession": "GCA_000600005.1",
                "taxid": 1196083,
                "species_taxid": 1196083,
                "relation_to_type": "type",
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                "matched_fragments": 547,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Snodgrassella alvi",
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                "accession": "GCA_022870965.1",
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                "species_taxid": 1196083,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.7594,
                "matched_fragments": 557,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Uruburuella testudinis",
                "strain": "strain=CCUG 63373m",
                "accession": "GCA_022870865.1",
                "taxid": 1282863,
                "species_taxid": 1282863,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.175,
                "matched_fragments": 64,
                "total_fragments": 813,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stenoxybacter acetivorans",
                "strain": "strain=DSM 19021",
                "accession": "GCA_000745895.1",
                "taxid": 422441,
                "species_taxid": 422441,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1615,
                "matched_fragments": 65,
                "total_fragments": 813,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_002777425.1",
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                "ani": 94.0898,
                "matched_fragments": 670,
                "total_fragments": 813,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Snodgrassella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.37",
                "min_intra_species_ani": "97.04",
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                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_002777825.1",
                "gtdb_species": "s__Snodgrassella alvi_C",
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                "matched_fragments": 682,
                "total_fragments": 813,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Snodgrassella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.79",
                "min_intra_species_ani": "98.79",
                "mean_intra_species_af": "0.90",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900094895.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Snodgrassella",
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                "mean_intra_species_ani": "96.52",
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                "num_clustered_genomes": 11,
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            },
            {
                "accession": "GCF_002777745.1",
                "gtdb_species": "s__Snodgrassella alvi_D",
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                "matched_fragments": 716,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Snodgrassella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.59",
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            },
            {
                "accession": "GCF_000600005.1",
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                "mean_intra_species_ani": "97.18",
                "min_intra_species_ani": "95.11",
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                "num_clustered_genomes": 47,
                "status": "-"
            },
            {
                "accession": "GCF_002777855.1",
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                "matched_fragments": 497,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Snodgrassella",
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                "min_intra_species_ani": "98.21",
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                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
                "status": "-"
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        ]
    },
    "_bac2feature": {
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        "cell_length": 0.0,
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        "rRNA16S_genes": 4.0,
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
        "Snodgrassella",
        "gandavensis"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}