{ "type": "genome", "identifier": "GCF_919586305.1", "organism": "Ralstonia pseudosolanacearum", "title": "Ralstonia pseudosolanacearum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "LM-UGent", "publication": [ {} ], "properties": { "assembly_accession": "GCF_919586305.1", "bioproject": "PRJNA224116", "biosample": "SAMEA10977831", "wgs_master": "CAKKOX000000000.1", "refseq_category": "na", "taxid": "1310165", "species_taxid": "1310165", "organism_name": "Ralstonia pseudosolanacearum", "infraspecific_name": "strain=LMG 9673", "isolate": "LMG 9673", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/11/26", "asm_name": "LMG 9673", "asm_submitter": "LM-UGent", "gbrs_paired_asm": "GCA_919586305.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/919/586/305/GCF_919586305.1_LMG_9673", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5437956", "genome_size_ungapped": "5437956", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "245", "contig_count": "245", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-01-28", "total_gene_count": "4968", "protein_coding_gene_count": "4738", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-11-26", "dateModified": "2021-11-26", "datePublished": "2021-11-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Ralstonia pseudosolanacearum" ], "sample_taxid": [ "1310165" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Reunion" ], "sample_host_location_id": [], "data_size": "1.494 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5437956", "Number of Sequences": "245", "Longest Sequences (bp)": "181865", "N50 (bp)": "69480", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.8", "Number of CDSs": "4758", "Average Protein Length": "321.9", "Coding Ratio (%)": "84.5", "Number of rRNAs": "3", "Number of tRNAs": "66", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ralstonia pseudosolanacearum", "strain": "strain=LMG 9673", "accession": "GCA_919586305.1", "taxid": 1310165, "species_taxid": 1310165, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1696, 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"strain=LMG 26411", "accession": "GCA_905397435.1", "taxid": 221992, "species_taxid": 221992, "relation_to_type": "type", "validated": true, "ani": 80.8594, "matched_fragments": 738, "total_fragments": 1704, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia perseverans", "strain": "strain=INN12", "accession": "GCA_022870505.1", "taxid": 2615214, "species_taxid": 2615214, "relation_to_type": "type", "validated": true, "ani": 78.7891, "matched_fragments": 680, "total_fragments": 1704, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia azotifigens", "strain": "strain=NF 2-5-3", "accession": "GCA_007995085.1", "taxid": 2057004, "species_taxid": 2057004, "relation_to_type": "type", "validated": true, "ani": 78.0297, "matched_fragments": 513, "total_fragments": 1704, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, 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