{ "type": "genome", "identifier": "GCF_921293875.1", "organism": "Vibrio stylophorae", "title": "Vibrio stylophorae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Valencia, Spain", "publication": [ {} ], "properties": { "assembly_accession": "GCF_921293875.1", "bioproject": "PRJNA224116", "biosample": "SAMEA10829028", "wgs_master": "CAKLDI000000000.1", "refseq_category": "reference genome", "taxid": "659351", "species_taxid": "659351", "organism_name": "Vibrio stylophorae", "infraspecific_name": "strain=CECT 7929", "isolate": "KTW-12", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/01/30", "asm_name": "V_stylophorae_CECT7929", "asm_submitter": "University of Valencia, Spain", "gbrs_paired_asm": "GCA_921293875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/921/293/875/GCF_921293875.1_V_stylophorae_CECT7929", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3495615", "genome_size_ungapped": "3495615", "gc_percent": "47.500000", "replicon_count": "0", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_921293875.1-RS_2024_07_08", "annotation_date": "2024-07-08", "total_gene_count": "3273", "protein_coding_gene_count": "3105", "non_coding_gene_count": "143", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-01-30", "dateModified": "2022-01-30", "datePublished": "2022-01-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio stylophorae" ], "sample_taxid": [ "659351" ], "sample_host_organism": [ "Vibrio" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Taiwan" ], "sample_host_location_id": [], "data_size": "0.988 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3495615", "Number of Sequences": "3", "Longest Sequences (bp)": "2875824", "N50 (bp)": "2875824", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "47.5", "Number of CDSs": "3139", "Average Protein Length": "317.6", "Coding Ratio (%)": "85.6", "Number of rRNAs": "28", "Number of tRNAs": "109", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vibrio stylophorae", "strain": "strain=CECT 7929", "accession": "GCA_921293875.1", "taxid": 659351, "species_taxid": 659351, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1161, "total_fragments": 1163, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Vibrio tasmaniensis", "strain": "strain=LMG 20012", "accession": "GCA_024347635.1", "taxid": 212663, "species_taxid": 212663, "relation_to_type": "suspected-type", "validated": true, "ani": 80.0838, "matched_fragments": 112, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio celticus", "strain": "strain=CECT 7224", "accession": "GCA_024347335.1", "taxid": 446372, "species_taxid": 446372, "relation_to_type": "type", "validated": true, "ani": 79.6195, "matched_fragments": 118, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Photobacterium toruni", "strain": "strain=CECT 9189", "accession": "GCA_024529955.1", "taxid": 1935446, "species_taxid": 1935446, "relation_to_type": "type", "validated": true, "ani": 79.4202, "matched_fragments": 135, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio neonatus", "strain": "strain=JCM 21521", "accession": "GCA_024346975.1", "taxid": 278860, "species_taxid": 278860, "relation_to_type": "type", "validated": true, "ani": 79.3419, "matched_fragments": 120, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio crassostreae", "strain": "strain=LMG 22240", "accession": "GCA_024347415.1", "taxid": 246167, "species_taxid": 246167, "relation_to_type": "type", "validated": true, "ani": 79.2098, "matched_fragments": 125, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Grimontia hollisae", "strain": "strain=CIP 101886", "accession": "GCA_000176515.1", "taxid": 673, "species_taxid": 673, "relation_to_type": "type", "validated": true, "ani": 78.9151, "matched_fragments": 126, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Grimontia hollisae", "strain": "strain=NCTC11640", "accession": "GCA_900450635.1", "taxid": 673, "species_taxid": 673, "relation_to_type": "type", "validated": true, "ani": 78.8931, "matched_fragments": 135, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio coralliilyticus", "strain": "strain=ATCC BAA-450", "accession": "GCA_000176135.1", "taxid": 190893, "species_taxid": 190893, "relation_to_type": "type", "validated": true, "ani": 78.8331, "matched_fragments": 124, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio furnissii", "strain": "strain=NCTC13120", "accession": "GCA_900460225.1", "taxid": 29494, "species_taxid": 29494, "relation_to_type": "type", "validated": true, "ani": 78.8251, "matched_fragments": 174, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio fluvialis", "strain": "strain=NCTC11327", "accession": "GCA_900460245.1", "taxid": 676, "species_taxid": 676, "relation_to_type": "type", "validated": true, "ani": 78.7659, "matched_fragments": 149, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio furnissii", "strain": "strain=FDAARGOS_777", "accession": "GCA_006364355.1", "taxid": 29494, "species_taxid": 29494, "relation_to_type": "type", "validated": true, "ani": 78.7481, "matched_fragments": 162, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio panuliri", "strain": "strain=JCM 19500", "accession": "GCA_009938205.1", "taxid": 1381081, "species_taxid": 1381081, "relation_to_type": "type", "validated": true, "ani": 78.7358, "matched_fragments": 144, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio fluvialis", "strain": "strain=ATCC 33809", "accession": "GCA_001558415.2", "taxid": 676, "species_taxid": 676, "relation_to_type": "type", "validated": true, "ani": 78.6338, "matched_fragments": 147, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio plantisponsor", "strain": "strain=LMG 24470", "accession": "GCA_013041605.1", "taxid": 664643, "species_taxid": 664643, "relation_to_type": "type", "validated": true, "ani": 78.5759, "matched_fragments": 103, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio panuliri", "strain": "strain=LBS 2", "accession": "GCA_008830195.1", "taxid": 1381081, "species_taxid": 1381081, "relation_to_type": "type", "validated": true, "ani": 78.3656, "matched_fragments": 136, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio diazotrophicus", "strain": "strain=NBRC 103148", "accession": "GCA_000740015.1", "taxid": 685, "species_taxid": 685, "relation_to_type": "type", "validated": true, "ani": 78.2754, "matched_fragments": 108, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterovibrio calviensis", "strain": "strain=DSM 14347", "accession": "GCA_000621165.1", "taxid": 91359, "species_taxid": 91359, "relation_to_type": "type", "validated": true, "ani": 78.266, "matched_fragments": 141, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio furnissii", "strain": "strain=CIP 102972", "accession": "GCA_000176175.1", "taxid": 29494, "species_taxid": 29494, "relation_to_type": "type", "validated": true, "ani": 78.2375, "matched_fragments": 154, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio thalassae", "strain": "strain=CECT8203", "accession": "GCA_900089835.1", "taxid": 1243014, "species_taxid": 1243014, "relation_to_type": "type", "validated": true, "ani": 78.0949, "matched_fragments": 113, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio cholerae", "strain": "strain=ATCC 14035", "accession": "GCA_000621645.1", "taxid": 666, "species_taxid": 666, "relation_to_type": "type", "validated": true, "ani": 78.0761, "matched_fragments": 144, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio rhodolitus", "strain": "strain=G98", "accession": "GCA_003350325.1", "taxid": 2231649, "species_taxid": 2231649, "relation_to_type": "type", "validated": true, "ani": 78.0197, "matched_fragments": 143, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Grimontia marina", "strain": "strain=CECT 8713", "accession": "GCA_900060185.1", "taxid": 646534, "species_taxid": 646534, "relation_to_type": "type", "validated": true, "ani": 78.0069, "matched_fragments": 130, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio paracholerae", "strain": "strain=EDC-792", "accession": "GCA_017169525.1", "taxid": 650003, "species_taxid": 650003, "relation_to_type": "type", "validated": true, "ani": 77.8894, "matched_fragments": 147, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio fluvialis", "strain": "strain=NBRC 103150", "accession": "GCA_001598835.1", "taxid": 676, "species_taxid": 676, "relation_to_type": "type", "validated": true, "ani": 77.6824, "matched_fragments": 136, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio mimicus", "strain": "strain=CAIM 602", "accession": "GCA_000338875.1", "taxid": 674, "species_taxid": 674, "relation_to_type": "type", "validated": true, "ani": 77.589, "matched_fragments": 149, "total_fragments": 1163, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002224265.1", "gtdb_species": "s__Vibrio vulnificus", "ani": 79.4329, "matched_fragments": 146, "total_fragments": 1163, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.11", "min_intra_species_ani": "95.22", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.85", "num_clustered_genomes": 225, "status": "-" }, { "accession": "GCF_000176515.1", "gtdb_species": "s__Enterovibrio hollisae", "ani": 79.0519, "matched_fragments": 123, "total_fragments": 1163, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Enterovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.40", "min_intra_species_ani": "99.22", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.96", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCF_900460245.1", "gtdb_species": "s__Vibrio fluvialis", "ani": 78.9413, "matched_fragments": 147, "total_fragments": 1163, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.04", "min_intra_species_ani": "97.07", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.86", "num_clustered_genomes": 63, "status": "-" }, { "accession": "GCF_009938205.1", "gtdb_species": "s__Vibrio panuliri", "ani": 78.8594, "matched_fragments": 142, "total_fragments": 1163, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.52", "min_intra_species_ani": "98.57", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.94", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000176135.1", "gtdb_species": "s__Vibrio coralliilyticus", "ani": 78.801, "matched_fragments": 123, "total_fragments": 1163, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.33", "min_intra_species_ani": "96.21", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 36, "status": "-" }, { "accession": "GCF_013041605.1", "gtdb_species": "s__Vibrio plantisponsor", "ani": 78.7129, "matched_fragments": 99, "total_fragments": 1163, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.35", "min_intra_species_ani": "98.35", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_003263845.1", "gtdb_species": "s__Vibrio aestivus", "ani": 78.5742, "matched_fragments": 95, "total_fragments": 1163, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003026815.1", "gtdb_species": "s__Photobacterium damselae", "ani": 78.4551, "matched_fragments": 137, "total_fragments": 1163, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Photobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.68", "min_intra_species_ani": "96.10", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.75", "num_clustered_genomes": 54, "status": "-" }, { "accession": "GCA_000695745.1", "gtdb_species": "s__Vibrio madracius", "ani": 78.3419, "matched_fragments": 51, "total_fragments": 1163, "gtdb_taxonomy": 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