{ "type": "genome", "identifier": "GCF_921294215.1", "organism": "Vibrio marisflavi CECT 7928", "title": "Vibrio marisflavi CECT 7928", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Valencia, Spain", "publication": [ {} ], "properties": { "assembly_accession": "GCF_921294215.1", "bioproject": "PRJNA224116", "biosample": "SAMEA10813684", "wgs_master": "CAKLDM000000000.1", "refseq_category": "reference genome", "taxid": "634439", "species_taxid": "1216040", "organism_name": "Vibrio marisflavi CECT 7928", "infraspecific_name": "strain=CECT 7928", "isolate": "WH134", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/01/29", "asm_name": "V_marisflavi_CECT7928", "asm_submitter": "University of Valencia, Spain", "gbrs_paired_asm": "GCA_921294215.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/921/294/215/GCF_921294215.1_V_marisflavi_CECT7928", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4782088", "genome_size_ungapped": "4782088", "gc_percent": "42.500000", "replicon_count": "0", "scaffold_count": "8", "contig_count": "8", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_921294215.1-RS_2024_07_08", "annotation_date": "2024-07-08", "total_gene_count": "4444", "protein_coding_gene_count": "4260", "non_coding_gene_count": "142", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-01-29", "dateModified": "2022-01-29", "datePublished": "2022-01-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio marisflavi CECT 7928" ], "sample_taxid": [ "634439" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.359 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4782088", "Number of Sequences": "8", "Longest Sequences (bp)": "2906288", "N50 (bp)": "2906288", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.3", "Number of CDSs": "4303", "Average Protein Length": "315.1", "Coding Ratio (%)": "85.1", "Number of rRNAs": "30", "Number of tRNAs": "105", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vibrio marisflavi", "strain": "strain=CECT 7928", "accession": "GCA_921294215.1", "taxid": 1216040, "species_taxid": 1216040, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1589, "total_fragments": 1590, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Vibrio pelagius", "strain": "strain=ATCC 25916", "accession": "GCA_024347575.1", "taxid": 28169, "species_taxid": 28169, "relation_to_type": "type", "validated": true, "ani": 80.382, "matched_fragments": 223, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio natriegens", "strain": "strain=CCUG 16371", "accession": "GCA_001680045.1", "taxid": 691, "species_taxid": 691, "relation_to_type": "type", "validated": true, "ani": 80.2088, "matched_fragments": 232, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio vulnificus", "strain": "strain=NCTC13647", "accession": "GCA_900460565.1", "taxid": 672, "species_taxid": 672, "relation_to_type": "type", "validated": true, "ani": 80.1417, "matched_fragments": 230, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio panuliri", "strain": "strain=JCM 19500", "accession": "GCA_009938205.1", "taxid": 1381081, "species_taxid": 1381081, "relation_to_type": "type", "validated": true, "ani": 80.0909, "matched_fragments": 226, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio ponticus", "strain": "strain=DSM 16217", "accession": "GCA_009938225.1", "taxid": 265668, "species_taxid": 265668, "relation_to_type": "type", "validated": true, "ani": 80.0722, "matched_fragments": 238, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio vulnificus", "strain": "strain=ATCC 27562", "accession": "GCA_002224265.1", "taxid": 672, "species_taxid": 672, "relation_to_type": "type", "validated": true, "ani": 80.0557, "matched_fragments": 227, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio cidicii", "strain": "strain=2756-81", "accession": "GCA_009763805.1", "taxid": 1763883, "species_taxid": 1763883, "relation_to_type": "type", "validated": true, "ani": 79.9162, "matched_fragments": 198, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio orientalis", "strain": "strain=CIP 102891", "accession": "GCA_000176235.1", "taxid": 28175, "species_taxid": 28175, "relation_to_type": "type", "validated": true, "ani": 79.8996, "matched_fragments": 263, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio hyugaensis", "strain": "strain=090810a", "accession": "GCA_002906655.1", "taxid": 1534743, "species_taxid": 1534743, "relation_to_type": "type", "validated": true, "ani": 79.896, "matched_fragments": 257, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio navarrensis", "strain": "strain=ATCC 51183", "accession": "GCA_000764325.1", "taxid": 29495, "species_taxid": 29495, "relation_to_type": "type", "validated": true, "ani": 79.8503, "matched_fragments": 184, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio chagasii", "strain": "strain=LMG 21353", "accession": "GCA_024347355.1", "taxid": 170679, "species_taxid": 170679, "relation_to_type": "suspected-type", "validated": true, "ani": 79.8467, "matched_fragments": 241, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio panuliri", "strain": "strain=LBS 2", "accession": "GCA_008830195.1", "taxid": 1381081, "species_taxid": 1381081, "relation_to_type": "type", "validated": true, "ani": 79.8106, "matched_fragments": 221, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio bivalvicida", "strain": "strain=605", "accession": "GCA_001399455.2", "taxid": 1276888, "species_taxid": 1276888, 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79.3101, "matched_fragments": 236, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio aquaticus", "strain": "strain=BEI207", "accession": "GCA_003970385.1", "taxid": 2496559, "species_taxid": 2496559, "relation_to_type": "type", "validated": true, "ani": 79.2311, "matched_fragments": 244, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio nereis", "strain": "strain=DSM 19584", "accession": "GCA_001274805.1", "taxid": 693, "species_taxid": 693, "relation_to_type": "type", "validated": true, "ani": 79.1964, "matched_fragments": 246, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio vulnificus", "strain": "strain=ATCC 27562", "accession": "GCA_000299635.1", "taxid": 672, "species_taxid": 672, "relation_to_type": "suspected-type", "validated": true, "ani": 79.1772, "matched_fragments": 181, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio ichthyoenteri", "strain": "strain=ATCC 700023", "accession": "GCA_000222605.2", "taxid": 142461, "species_taxid": 142461, "relation_to_type": "type", "validated": true, "ani": 79.1708, "matched_fragments": 217, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio renipiscarius", "strain": "strain=DCR 1-4-2", "accession": "GCA_000827885.1", "taxid": 1461322, "species_taxid": 1461322, "relation_to_type": "type", "validated": true, "ani": 79.1641, "matched_fragments": 221, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio sinensis", "strain": "strain=BEI233", "accession": "GCA_003605645.1", "taxid": 2302434, "species_taxid": 2302434, "relation_to_type": "type", "validated": true, "ani": 79.159, "matched_fragments": 212, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio nereis", "strain": "strain=NBRC 15637", "accession": "GCA_001591105.1", "taxid": 693, "species_taxid": 693, "relation_to_type": "type", "validated": true, "ani": 79.148, "matched_fragments": 237, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio orientalis", "strain": "strain=CIP 102891", "accession": "GCA_000222645.2", "taxid": 28175, "species_taxid": 28175, "relation_to_type": "type", "validated": true, "ani": 79.1033, "matched_fragments": 247, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio hyugaensis", "strain": "strain=090810a", "accession": "GCA_000818435.1", "taxid": 1534743, "species_taxid": 1534743, "relation_to_type": "type", "validated": true, "ani": 79.0998, "matched_fragments": 237, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio aestuarianus subsp. cardii", "strain": "strain=12/122 3T3", "accession": "GCA_011090275.1", "taxid": 2807650, "species_taxid": 28171, "relation_to_type": "type", "validated": true, "ani": 79.0584, "matched_fragments": 233, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio vulnificus", "strain": "strain=NBRC 15645", "accession": "GCA_001591065.1", "taxid": 672, "species_taxid": 672, "relation_to_type": "type", "validated": true, "ani": 79.049, "matched_fragments": 214, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio aestuarianus", "strain": "strain=LMG 7909", "accession": "GCA_012395185.1", "taxid": 28171, "species_taxid": 28171, "relation_to_type": "type", "validated": true, "ani": 78.941, "matched_fragments": 243, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_003263805.1", "gtdb_species": 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