{ "type": "genome", "identifier": "GCF_927798115.1", "organism": "Paenibacillus auburnensis", "title": "Paenibacillus auburnensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institut Pasteur", "publication": [ {} ], "properties": { "assembly_accession": "GCF_927798115.1", "bioproject": "PRJNA224116", "biosample": "SAMEA12303383", "wgs_master": "CAKMMG000000000.1", "refseq_category": "reference genome", "taxid": "2905649", "species_taxid": "2905649", "organism_name": "Paenibacillus auburnensis", "infraspecific_name": "na", "isolate": "CIP111892", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/01/24", "asm_name": "CIP111892", "asm_submitter": "Institut Pasteur", "gbrs_paired_asm": "GCA_927798115.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/927/798/115/GCF_927798115.1_CIP111892", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6439446", "genome_size_ungapped": "6439326", "gc_percent": "50.000000", "replicon_count": "0", "scaffold_count": "25", "contig_count": "25", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_927798115.1-RS_2024_04_15", "annotation_date": "2024-04-15", "total_gene_count": "5741", "protein_coding_gene_count": "5591", "non_coding_gene_count": "111", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-01-24", "dateModified": "2022-01-24", "datePublished": "2022-01-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus auburnensis" ], "sample_taxid": [ "2905649" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.836 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6439446", "Number of Sequences": "25", "Longest Sequences (bp)": "2605398", "N50 (bp)": "445723", "Gap Ratio (%)": "0.001864", "GCcontent (%)": "50.2", "Number of CDSs": "5703", "Average Protein Length": "330.3", "Coding Ratio (%)": "87.8", "Number of rRNAs": "2", "Number of tRNAs": "85", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenibacillus ihuae", "strain": "strain=GD6", "accession": "GCA_001368795.1", "taxid": 1232431, "species_taxid": 1232431, "relation_to_type": "type", "validated": true, "ani": 93.9066, "matched_fragments": 1787, "total_fragments": 2134, "ani_threshold": 95, "status": 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"Paenibacillus phytohabitans", "strain": "strain=LMG 31459", "accession": "GCA_013141775.1", "taxid": 2654978, "species_taxid": 2654978, "relation_to_type": "type", "validated": true, "ani": 81.0921, "matched_fragments": 1171, "total_fragments": 2134, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus borealis", "strain": "strain=DSM 13188", "accession": "GCA_000758665.1", "taxid": 160799, "species_taxid": 160799, "relation_to_type": "type", "validated": true, "ani": 80.9907, "matched_fragments": 1210, "total_fragments": 2134, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus riograndensis", "strain": "strain=SBR5", "accession": "GCA_000224945.2", "taxid": 483937, "species_taxid": 483937, "relation_to_type": "type", "validated": true, "ani": 80.9891, "matched_fragments": 817, "total_fragments": 2134, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus riograndensis", "strain": "", "accession": "GCA_000981585.1", "taxid": 483937, "species_taxid": 483937, "relation_to_type": "type", "validated": true, "ani": 80.9689, "matched_fragments": 1084, "total_fragments": 2134, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus jilunlii", "strain": "strain=CGMCC 1.10239", "accession": "GCA_900102965.1", "taxid": 682956, "species_taxid": 682956, "relation_to_type": "type", "validated": true, "ani": 80.9659, "matched_fragments": 1107, "total_fragments": 2134, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus jilunlii", "strain": "strain=DSM 23019", "accession": "GCA_001546055.1", "taxid": 682956, "species_taxid": 682956, "relation_to_type": "type", "validated": true, "ani": 80.9639, "matched_fragments": 1113, "total_fragments": 2134, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus sonchi", "strain": "strain=LMG 24727", "accession": "GCA_016772475.1", "taxid": 373687, 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