{
    "type": "genome",
    "identifier": "GCF_937468385.1",
    "organism": "Neobacillus rhizosphaerae",
    "title": "Neobacillus rhizosphaerae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Institut Pasteur",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_937468385.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA10017782",
        "wgs_master": "CALBWS000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2880965",
        "species_taxid": "2880965",
        "organism_name": "Neobacillus rhizosphaerae",
        "infraspecific_name": "strain=CIP 111895",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/05/02",
        "asm_name": "JJ-3",
        "asm_submitter": "Institut Pasteur",
        "gbrs_paired_asm": "GCA_937468385.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/937/468/385/GCF_937468385.1_JJ-3",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5049395",
        "genome_size_ungapped": "5049195",
        "gc_percent": "38.500000",
        "replicon_count": "0",
        "scaffold_count": "80",
        "contig_count": "80",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_937468385.1-RS_2024_11_26",
        "annotation_date": "2024-11-26",
        "total_gene_count": "4969",
        "protein_coding_gene_count": "4749",
        "non_coding_gene_count": "113",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-05-02",
    "dateModified": "2022-05-02",
    "datePublished": "2022-05-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Neobacillus rhizosphaerae"
        ],
        "sample_taxid": [
            "2880965"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.435 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5049395",
        "Number of Sequences": "80",
        "Longest Sequences (bp)": "556177",
        "N50 (bp)": "106148",
        "Gap Ratio (%)": "0.003961",
        "GCcontent (%)": "38.3",
        "Number of CDSs": "4830",
        "Average Protein Length": "285.2",
        "Coding Ratio (%)": "81.8",
        "Number of rRNAs": "6",
        "Number of tRNAs": "84",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Neobacillus novalis",
                "strain": "strain=NBRC 102450",
                "accession": "GCA_001591805.1",
                "taxid": 220687,
                "species_taxid": 220687,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.3467,
                "matched_fragments": 930,
                "total_fragments": 1645,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neobacillus novalis",
                "strain": "strain=FJAT-14227",
                "accession": "GCA_001636395.1",
                "taxid": 220687,
                "species_taxid": 220687,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.3213,
                "matched_fragments": 956,
                "total_fragments": 1645,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neobacillus vireti",
                "strain": "strain=DSM 15602",
                "accession": "GCA_001026695.1",
                "taxid": 220686,
                "species_taxid": 220686,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.0168,
                "matched_fragments": 926,
                "total_fragments": 1645,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neobacillus vireti",
                "strain": "strain=LMG 21834",
                "accession": "GCA_000508325.2",
                "taxid": 220686,
                "species_taxid": 220686,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.9773,
                "matched_fragments": 844,
                "total_fragments": 1645,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neobacillus soli",
                "strain": "strain=DSM 15604",
                "accession": "GCA_002335815.1",
                "taxid": 220688,
                "species_taxid": 220688,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.8213,
                "matched_fragments": 793,
                "total_fragments": 1645,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neobacillus soli",
                "strain": "strain=NBRC 102451",
                "accession": "GCA_001591665.1",
                "taxid": 220688,
                "species_taxid": 220688,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7181,
                "matched_fragments": 774,
                "total_fragments": 1645,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neobacillus bataviensis",
                "strain": "strain=LMG 21833",
                "accession": "GCA_000307875.1",
                "taxid": 220685,
                "species_taxid": 220685,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.3282,
                "matched_fragments": 711,
                "total_fragments": 1645,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neobacillus jeddahensis",
                "strain": "strain=JCE",
                "accession": "GCA_000612625.1",
                "taxid": 1461580,
                "species_taxid": 1461580,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.525,
                "matched_fragments": 580,
                "total_fragments": 1645,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neobacillus drentensis",
                "strain": "strain=FJAT-10044",
                "accession": "GCA_001636415.1",
                "taxid": 220684,
                "species_taxid": 220684,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.5127,
                "matched_fragments": 632,
                "total_fragments": 1645,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neobacillus drentensis",
                "strain": "strain=NBRC 102427",
                "accession": "GCA_001591445.1",
                "taxid": 220684,
                "species_taxid": 220684,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4298,
                "matched_fragments": 620,
                "total_fragments": 1645,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neobacillus cucumis",
                "strain": "strain=DSM 101566",
                "accession": "GCA_016908975.1",
                "taxid": 1740721,
                "species_taxid": 1740721,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8244,
                "matched_fragments": 461,
                "total_fragments": 1645,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neobacillus citreus",
                "strain": "strain=FJAT-50051",
                "accession": "GCA_018343545.2",
                "taxid": 2833578,
                "species_taxid": 2833578,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3592,
                "matched_fragments": 432,
                "total_fragments": 1645,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neobacillus endophyticus",
                "strain": "strain=BRMEA1",
                "accession": "GCA_013248975.1",
                "taxid": 2738405,
                "species_taxid": 2738405,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.144,
                "matched_fragments": 380,
                "total_fragments": 1645,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cytobacillus solani",
                "strain": "strain=FJAT-18043",
                "accession": "GCA_001420595.1",
                "taxid": 1637975,
                "species_taxid": 1637975,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9572,
                "matched_fragments": 205,
                "total_fragments": 1645,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neobacillus fumarioli",
                "strain": "strain=NBRC 102428",
                "accession": "GCA_001591485.1",
                "taxid": 105229,
                "species_taxid": 105229,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7962,
                "matched_fragments": 277,
                "total_fragments": 1645,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Peribacillus frigoritolerans",
                "strain": "strain=FJAT-2396",
                "accession": "GCA_001636405.1",
                "taxid": 450367,
                "species_taxid": 450367,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4207,
                "matched_fragments": 103,
                "total_fragments": 1645,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Peribacillus frigoritolerans",
                "strain": "strain=DSM 8801",
                "accession": "GCA_024169475.1",
                "taxid": 450367,
                "species_taxid": 450367,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1727,
                "matched_fragments": 96,
                "total_fragments": 1645,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sutcliffiella deserti",
                "strain": "strain=DG-18",
                "accession": "GCA_020037475.1",
                "taxid": 2875501,
                "species_taxid": 2875501,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.256,
                "matched_fragments": 62,
                "total_fragments": 1645,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001591805.1",
                "gtdb_species": "s__Neobacillus novalis",
                "ani": 82.3354,
                "matched_fragments": 931,
                "total_fragments": 1645,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001026695.1",
                "gtdb_species": "s__Neobacillus vireti",
                "ani": 82.0296,
                "matched_fragments": 923,
                "total_fragments": 1645,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001591665.1",
                "gtdb_species": "s__Neobacillus soli",
                "ani": 80.7201,
                "matched_fragments": 775,
                "total_fragments": 1645,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000307875.1",
                "gtdb_species": "s__Neobacillus bataviensis",
                "ani": 80.3412,
                "matched_fragments": 709,
                "total_fragments": 1645,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900177675.1",
                "gtdb_species": "s__Neobacillus sp900177675",
                "ani": 80.069,
                "matched_fragments": 702,
                "total_fragments": 1645,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.52",
                "min_intra_species_ani": "98.52",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_018613065.1",
                "gtdb_species": "s__Neobacillus sp018613065",
                "ani": 80.0497,
                "matched_fragments": 653,
                "total_fragments": 1645,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.53",
                "min_intra_species_ani": "95.32",
                "mean_intra_species_af": "0.78",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_005154805.1",
                "gtdb_species": "s__Neobacillus sp005154805",
                "ani": 79.9548,
                "matched_fragments": 748,
                "total_fragments": 1645,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_011250555.1",
                "gtdb_species": "s__Neobacillus sp011250555",
                "ani": 79.8513,
                "matched_fragments": 662,
                "total_fragments": 1645,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_019219025.1",
                "gtdb_species": "s__Neobacillus sp019219025",
                "ani": 79.6548,
                "matched_fragments": 672,
                "total_fragments": 1645,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000686805.1",
                "gtdb_species": "s__Neobacillus sp000686805",
                "ani": 79.5761,
                "matched_fragments": 635,
                "total_fragments": 1645,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000612625.1",
                "gtdb_species": "s__Neobacillus jeddahensis",
                "ani": 79.5298,
                "matched_fragments": 579,
                "total_fragments": 1645,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_002585305.1",
                "gtdb_species": "s__Neobacillus sp002585305",
                "ani": 79.0454,
                "matched_fragments": 543,
                "total_fragments": 1645,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.64",
                "min_intra_species_ani": "95.53",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_013248975.1",
                "gtdb_species": "s__Neobacillus endophyticus",
                "ani": 78.1644,
                "matched_fragments": 381,
                "total_fragments": 1645,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001591485.1",
                "gtdb_species": "s__Neobacillus fumarioli",
                "ani": 77.8009,
                "matched_fragments": 275,
                "total_fragments": 1645,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001591465.1",
                "gtdb_species": "s__Cytobacillus firmus",
                "ani": 76.9699,
                "matched_fragments": 129,
                "total_fragments": 1645,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.21",
                "min_intra_species_ani": "98.02",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 11,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Neobacillus",
        "rhizosphaerae"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}