{
    "type": "genome",
    "identifier": "GCF_943169845.1",
    "organism": "Peptoniphilus rachelemmaiella",
    "title": "Peptoniphilus rachelemmaiella",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "norwich medical school, university of east anglia, uk",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_943169845.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA8117583",
        "wgs_master": "CALPBW000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2811779",
        "species_taxid": "2811779",
        "organism_name": "Peptoniphilus rachelemmaiella",
        "infraspecific_name": "strain=EMRHCC_23",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/06/10",
        "asm_name": "ASM94316984v1",
        "asm_submitter": "norwich medical school, university of east anglia, uk",
        "gbrs_paired_asm": "GCA_943169845.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/943/169/845/GCF_943169845.1_ASM94316984v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1911878",
        "genome_size_ungapped": "1911740",
        "gc_percent": "49.000000",
        "replicon_count": "0",
        "scaffold_count": "41",
        "contig_count": "41",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_943169845.1-RS_2024_06_16",
        "annotation_date": "2024-06-16",
        "total_gene_count": "1910",
        "protein_coding_gene_count": "1822",
        "non_coding_gene_count": "60",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-06-10",
    "dateModified": "2022-06-10",
    "datePublished": "2022-06-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Peptoniphilus rachelemmaiella"
        ],
        "sample_taxid": [
            "2811779"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.542 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1911878",
        "Number of Sequences": "41",
        "Longest Sequences (bp)": "220890",
        "N50 (bp)": "102427",
        "Gap Ratio (%)": "0.007218",
        "GCcontent (%)": "48.8",
        "Number of CDSs": "1822",
        "Average Protein Length": "315.4",
        "Coding Ratio (%)": "90.2",
        "Number of rRNAs": "5",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Peptoniphilus rachelemmaiella",
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                "accession": "GCA_943169845.1",
                "taxid": 2811779,
                "species_taxid": 2811779,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 612,
                "total_fragments": 615,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Peptoniphilus pacaensis",
                "strain": "strain=Kh-D5",
                "accession": "GCA_900088125.1",
                "taxid": 1776390,
                "species_taxid": 1776390,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.0928,
                "matched_fragments": 444,
                "total_fragments": 615,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Peptoniphilus urinimassiliensis",
                "strain": "strain=Marseille-P3195",
                "accession": "GCA_900155585.1",
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                "species_taxid": 1871017,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.8501,
                "matched_fragments": 460,
                "total_fragments": 615,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Peptoniphilus nemausensis",
                "strain": "strain=1804121828",
                "accession": "GCA_903819165.1",
                "taxid": 2582829,
                "species_taxid": 2582829,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.3055,
                "matched_fragments": 256,
                "total_fragments": 615,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_902363535.1",
                "gtdb_species": "s__Peptoniphilus_C sp902363535",
                "ani": 89.7089,
                "matched_fragments": 501,
                "total_fragments": 615,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.41",
                "min_intra_species_ani": "97.41",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900343085.1",
                "gtdb_species": "s__Peptoniphilus_C sp900343085",
                "ani": 89.5583,
                "matched_fragments": 475,
                "total_fragments": 615,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900088125.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900155585.1",
                "gtdb_species": "s__Peptoniphilus_C urinimassiliensis",
                "ani": 85.8972,
                "matched_fragments": 457,
                "total_fragments": 615,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001553115.1",
                "gtdb_species": "s__Peptoniphilus_C coxii",
                "ani": 80.7189,
                "matched_fragments": 293,
                "total_fragments": 615,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_903819165.1",
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                "matched_fragments": 256,
                "total_fragments": 615,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.228,
        "cell_length": -0.204,
        "doubling_h": null,
        "growth_tmp": 37.0,
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        "gc_content": 31.795,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 0.333,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Peptoniphilus",
        "rachelemmaiella"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}