{ "type": "genome", "identifier": "GCF_943192935.1", "organism": "Limosilactobacillus caecicola", "title": "Limosilactobacillus caecicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "RWTH Aachen University Hospital", "publication": [ {} ], "properties": { "assembly_accession": "GCF_943192935.1", "bioproject": "PRJNA224116", "biosample": "SAMEA14418534", "wgs_master": "CALPCI000000000.1", "refseq_category": "reference genome", "taxid": "2941332", "species_taxid": "2941332", "organism_name": "Limosilactobacillus caecicola", "infraspecific_name": "strain=DSM 110982", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/06/10", "asm_name": "Limosilactobacillus_sp_nov1_DSM110982", "asm_submitter": "RWTH Aachen University Hospital", "gbrs_paired_asm": "GCA_943192935.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/943/192/935/GCF_943192935.1_Limosilactobacillus_sp_nov1_DSM110982", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1694529", "genome_size_ungapped": "1694529", "gc_percent": "44.500000", "replicon_count": "0", "scaffold_count": "11", "contig_count": "11", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_943192935.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "1711", "protein_coding_gene_count": "1630", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-06-10", "dateModified": "2022-06-10", "datePublished": "2022-06-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Limosilactobacillus caecicola" ], "sample_taxid": [ "2941332" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany" ], "sample_host_location_id": [], "data_size": "0.484 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1694529", "Number of Sequences": "11", "Longest Sequences (bp)": "551393", "N50 (bp)": "496081", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.7", "Number of CDSs": "1655", "Average Protein Length": "303.8", "Coding Ratio (%)": "89.0", "Number of rRNAs": "2", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Limosilactobacillus pontis", "strain": "strain=DSM 8475", "accession": "GCA_001435345.1", "taxid": 35787, 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"type", "validated": true, "ani": 78.6691, "matched_fragments": 81, "total_fragments": 559, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus vaginalis", "strain": "strain=DSM 5837", "accession": "GCA_001435915.1", "taxid": 1633, "species_taxid": 1633, "relation_to_type": "type", "validated": true, "ani": 78.6578, "matched_fragments": 79, "total_fragments": 559, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus reuteri subsp. suis", "strain": "strain=ATCC 53608", "accession": "GCA_000236455.2", "taxid": 927703, "species_taxid": 1598, "relation_to_type": "type", "validated": true, "ani": 78.6571, "matched_fragments": 78, "total_fragments": 559, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus albertensis", "strain": "strain=Lr3000", "accession": "GCA_014145555.1", "taxid": 2759752, "species_taxid": 2759752, "relation_to_type": "type", "validated": true, "ani": 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"below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000161935.1", "gtdb_species": "s__Limosilactobacillus coleohominis_A", "ani": 79.9838, "matched_fragments": 233, "total_fragments": 559, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016901675.1", "gtdb_species": "s__Limosilactobacillus coleohominis", "ani": 79.9261, "matched_fragments": 176, "total_fragments": 559, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.52", "min_intra_species_ani": "96.59", 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