{ "type": "genome", "identifier": "GCF_947077775.1", "organism": "Salinibacter pepae", "title": "Salinibacter pepae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "IMEDEA", "publication": [ {} ], "properties": { "assembly_accession": "GCF_947077775.1", "bioproject": "PRJNA224116", "biosample": "SAMEA111451236", "wgs_master": "CAMTTE000000000.1", "refseq_category": "reference genome", "taxid": "3040382", "species_taxid": "3040382", "organism_name": "Salinibacter pepae", "infraspecific_name": "strain=ESAV49", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/18", "asm_name": "Salinibacter ESAV49", "asm_submitter": "IMEDEA", "gbrs_paired_asm": "GCA_947077775.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/947/077/775/GCF_947077775.1_Salinibacter_ESAV49", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3628012", "genome_size_ungapped": "3628012", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_947077775.1-RS_2024_04_15", "annotation_date": "2024-04-15", "total_gene_count": "3052", "protein_coding_gene_count": "2977", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-18", "dateModified": "2022-10-18", "datePublished": "2022-10-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Salinibacter sp." ], "sample_taxid": [ "2065818" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.005 MB", 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"Salinibacter altiplanensis", "strain": "strain=AN15", "accession": "GCA_002894645.1", "taxid": 1803181, "species_taxid": 1803181, "relation_to_type": "type", "validated": true, "ani": 84.9477, "matched_fragments": 907, "total_fragments": 1208, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Longimonas halophila", "strain": "strain=KCTC 42399", "accession": "GCA_002554705.1", "taxid": 1469170, "species_taxid": 1469170, "relation_to_type": "type", "validated": true, "ani": 76.7913, "matched_fragments": 128, "total_fragments": 1208, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salisaeta longa", "strain": "strain=DSM 21114", "accession": "GCA_000419585.1", "taxid": 503170, "species_taxid": 503170, "relation_to_type": "type", "validated": true, "ani": 76.5724, "matched_fragments": 173, "total_fragments": 1208, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodocaloribacter litoris", "strain": "strain=ISCAR-4553", "accession": "GCA_011682235.2", "taxid": 2558931, "species_taxid": 2558931, "relation_to_type": "type", "validated": true, "ani": 76.4887, "matched_fragments": 149, "total_fragments": 1208, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Longibacter salinarum", "strain": "strain=KCTC 52045", "accession": "GCA_002554795.1", "taxid": 1850348, "species_taxid": 1850348, "relation_to_type": "type", "validated": true, "ani": 76.3329, "matched_fragments": 124, "total_fragments": 1208, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubricoccus marinus", "strain": "strain=SG-29", "accession": "GCA_002257665.1", "taxid": 716817, "species_taxid": 716817, "relation_to_type": "type", "validated": true, "ani": 75.933, "matched_fragments": 82, "total_fragments": 1208, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubrivirga marina", "strain": "strain=SAORIC-28", "accession": "GCA_002283365.1", "taxid": 1196024, "species_taxid": 1196024, "relation_to_type": "type", "validated": true, "ani": 75.6765, "matched_fragments": 146, "total_fragments": 1208, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura latina", "strain": "strain=ATCC BAA-277", "accession": "GCA_012396395.1", "taxid": 163603, "species_taxid": 163603, "relation_to_type": "type", "validated": true, "ani": 74.81, "matched_fragments": 85, "total_fragments": 1208, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura coerulea", "strain": "strain=DSM 43675", "accession": "GCA_014208105.1", "taxid": 46159, "species_taxid": 46159, "relation_to_type": "type", "validated": true, "ani": 74.8069, "matched_fragments": 95, "total_fragments": 1208, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura coerulea", "strain": "strain=JCM 3320", "accession": "GCA_014648535.1", "taxid": 46159, "species_taxid": 46159, "relation_to_type": "type", "validated": true, "ani": 74.7711, "matched_fragments": 92, "total_fragments": 1208, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura rifamycini", "strain": "strain=DSM 43936", "accession": "GCA_000425065.1", "taxid": 31962, "species_taxid": 31962, "relation_to_type": "type", "validated": true, "ani": 74.7125, "matched_fragments": 112, "total_fragments": 1208, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura mexicana", "strain": "strain=DSM 44485", "accession": "GCA_900188105.1", "taxid": 134959, "species_taxid": 134959, "relation_to_type": "type", "validated": true, "ani": 74.7039, "matched_fragments": 108, "total_fragments": 1208, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000013045.1", "gtdb_species": "s__Salinibacter ruber", "ani": 95.285, "matched_fragments": 1051, "total_fragments": 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64.438, "coding_genes": 2992.8, "rRNA16S_genes": 1.0, "tRNA_genes": 44.333, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Salinibacter", "pepae" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }