{ "type": "genome", "identifier": "GCF_948472335.1", "organism": "Streptococcus bouchesdurhonensis", "title": "Streptococcus bouchesdurhonensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "IHU - Mediterranee Infection", "publication": [ {} ], "properties": { "assembly_accession": "GCF_948472335.1", "bioproject": "PRJNA224116", "biosample": "SAMEA112361241", "wgs_master": "CAOKTW000000000.1", "refseq_category": "reference genome", "taxid": "2954240", "species_taxid": "2954240", "organism_name": "Streptococcus bouchesdurhonensis", "infraspecific_name": "strain=Marseille-Q6994", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/02/03", "asm_name": "Marseille-Q6994", "asm_submitter": "IHU - Mediterranee Infection", "gbrs_paired_asm": "GCA_948472335.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/948/472/335/GCF_948472335.1_Marseille-Q6994", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3766235", "genome_size_ungapped": "3766235", "gc_percent": "40.000000", "replicon_count": "0", "scaffold_count": "42", "contig_count": "42", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_948472335.1-RS_2024_05_12", "annotation_date": "2024-05-12", "total_gene_count": "3854", "protein_coding_gene_count": "3198", "non_coding_gene_count": "108", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-02-03", "dateModified": "2023-02-03", "datePublished": "2023-02-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus bouchesdurhonensis" ], "sample_taxid": [ "2954240" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.059 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 81.94, "strain_heterogeneity": 96.15, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3766235", "Number of Sequences": "42", "Longest Sequences (bp)": "570298", "N50 (bp)": "243709", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.1", "Number of CDSs": "3917", "Average Protein Length": "274.0", "Coding Ratio (%)": "85.5", "Number of rRNAs": "16", "Number of tRNAs": "84", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus pseudopneumoniae", "strain": "strain=CCUG 49455", "accession": "GCA_002087075.1", "taxid": 257758, "species_taxid": 257758, 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"total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pneumoniae", "strain": "strain=NCTC7465", "accession": "GCA_001457635.1", "taxid": 1313, "species_taxid": 1313, "relation_to_type": "type", "validated": true, "ani": 93.9561, "matched_fragments": 585, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus pneumoniae", "strain": "strain=CCUG 28588", "accession": "GCA_001679535.1", "taxid": 1313, "species_taxid": 1313, "relation_to_type": "type", "validated": true, "ani": 93.944, "matched_fragments": 543, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus vulneris", "strain": "strain=DM3B3", "accession": "GCA_019218685.1", "taxid": 2853160, "species_taxid": 2853160, "relation_to_type": "type", "validated": true, "ani": 93.8187, "matched_fragments": 540, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus gwangjuense", "strain": "strain=ChDC B345", "accession": "GCA_003627155.1", "taxid": 1433513, "species_taxid": 1433513, "relation_to_type": "type", "validated": true, "ani": 93.5686, "matched_fragments": 549, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus chosunense", "strain": "strain=ChDC B353", "accession": "GCA_003626515.1", "taxid": 2707003, "species_taxid": 2707003, "relation_to_type": "type", "validated": true, "ani": 93.5011, "matched_fragments": 530, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus symci", "strain": "strain=C17", "accession": "GCA_006385165.1", "taxid": 2588991, "species_taxid": 2588991, "relation_to_type": "type", "validated": true, "ani": 93.2147, "matched_fragments": 559, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"strain": "strain=SUT-286", "accession": "GCA_021654455.1", "taxid": 1501662, "species_taxid": 1501662, "relation_to_type": "suspected-type", "validated": true, "ani": 79.8832, "matched_fragments": 169, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus oriscaviae", "strain": "strain=HKU75", "accession": "GCA_018137985.1", "taxid": 2781599, "species_taxid": 2781599, "relation_to_type": "type", "validated": true, "ani": 78.5411, "matched_fragments": 141, "total_fragments": 1235, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 81.94, "strain_heterogeneity": 96.15 }, "gtdb_result": [ { "accession": "GCF_002087075.1", "gtdb_species": "s__Streptococcus pseudopneumoniae", "ani": 96.4399, "matched_fragments": 628, "total_fragments": 1235, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", 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