{ "type": "genome", "identifier": "GCF_963396225.1", "organism": "Neisseria subflava", "title": "Neisseria subflava", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Wellcome Sanger Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_963396225.1", "bioproject": "PRJNA224116", "biosample": "SAMEA678330", "wgs_master": "CAUJRI000000000.1", "refseq_category": "na", "taxid": "28449", "species_taxid": "28449", "organism_name": "Neisseria subflava", "infraspecific_name": "strain=CCUG 23930 T", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/08/28", "asm_name": "CCUG 23930 T", "asm_submitter": "Wellcome Sanger Institute", "gbrs_paired_asm": "GCA_963396225.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/963/396/225/GCF_963396225.1_CCUG_23930_T", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2156389", "genome_size_ungapped": "2156389", "gc_percent": "49.500000", "replicon_count": "0", "scaffold_count": "67", "contig_count": "67", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_963396225.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "2129", "protein_coding_gene_count": "1984", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-08-28", "dateModified": "2023-08-28", "datePublished": "2023-08-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Neisseria subflava" ], "sample_taxid": [ "28449" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [ "Healthy" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.607 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2156389", "Number of Sequences": "67", "Longest Sequences (bp)": "349610", "N50 (bp)": "280990", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "49.4", "Number of CDSs": "1993", "Average Protein Length": "304.6", "Coding Ratio (%)": "84.5", "Number of rRNAs": "3", "Number of tRNAs": "52", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Neisseria subflava", "strain": "strain=ATCC 49275", "accession": "GCA_005221305.1", "taxid": 28449, "species_taxid": 28449, "relation_to_type": "type", "validated": true, "ani": 99.9969, "matched_fragments": 693, "total_fragments": 693, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Neisseria flavescens", "strain": "strain=ATCC 13120", "accession": "GCA_005221285.1", "taxid": 484, "species_taxid": 484, "relation_to_type": "type", "validated": true, "ani": 94.7951, "matched_fragments": 604, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria flavescens", "strain": "strain=NCTC8263", "accession": "GCA_900453805.1", "taxid": 484, "species_taxid": 484, "relation_to_type": "type", "validated": true, "ani": 94.7491, "matched_fragments": 613, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria perflava", "strain": "strain=CCUG 17915", "accession": "GCA_023472875.1", "taxid": 33053, "species_taxid": 33053, "relation_to_type": "suspected-type", "validated": true, "ani": 94.4559, "matched_fragments": 605, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria cinerea", "strain": "strain=CCUG 2156", "accession": "GCA_021025975.1", "taxid": 483, "species_taxid": 483, "relation_to_type": "type", "validated": true, "ani": 85.8374, "matched_fragments": 373, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria cinerea", "strain": "strain=NCTC10294", "accession": "GCA_900475315.1", "taxid": 483, "species_taxid": 483, "relation_to_type": "type", "validated": true, "ani": 85.7608, "matched_fragments": 373, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria cinerea", "strain": "strain=ATCC 14685", "accession": "GCA_000173895.1", "taxid": 483, "species_taxid": 483, "relation_to_type": "type", "validated": true, "ani": 85.6115, "matched_fragments": 373, "total_fragments": 693, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Morococcus cerebrosus", "strain": "strain=CIP 81.93", "accession": "GCA_000813705.1", "taxid": 1056807, "species_taxid": 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"d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria", "ani_circumscription_radius": 95.0019, "mean_intra_species_ani": "96.64", "min_intra_species_ani": "96.07", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.88", "num_clustered_genomes": 22, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.086, "cell_length": -0.056, "doubling_h": -0.218, "growth_tmp": 33.0, "optimum_tmp": 36.0, "optimum_ph": 7.0, "genome_size": 2307428.0, "gc_content": 49.0, "coding_genes": 2098.0, "rRNA16S_genes": 4.014, "tRNA_genes": 59.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Neisseria", "subflava" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }