Hiroshi Mori
Ken Kurokawa
Jun'ichi Takehara
Shinya Suzuki
An ontology to descrive sampling environment state of metagenome sequeunce.
MSV: Metagenome Sample Vocabulary
Version 0.1
In molecular biology, CD4 (cluster of differentiation 4) is a glycoprotein found on the surface of immune cells such as T helper cells, monocytes, macrophages, and dendritic cells.
CD4 count
Current_CD4_count
cd4_value
nadir_cd4_count
a measure of the relative oxygen-depletion effect of a waste contaminant
chemical oxygen demand
COD
ChemOxygenDem
Chemical oxygen demand (g/kg)
chem oxygen dem
chem_oxygen_dem
HIV duration
material state in something another material
availability
concentration that host can use
bio-available
use property-associated object is dissolved into something
dissolved
A season is a period of time that is divided by temperature , precipitation , wind direction and etc changes
season
A standard error is the quantity of variation about same operation from the average (mean, or expected value).
standard error
state that is too big to through filter
particulate
polycyclic aromatic hydrocarbon concentration
PAH concentration
PAH
PAHs
total_PAH
PCR quality method
quality_meth
lead concentration
Lead concentration
Lead
Pb concentration
Pb_total
total Pb concentration
total lead concentration
RNA depletion method
RNA depletion
rRNA_depletion
rrna depletion
RNA selection method
rna selection method
acetate concentration
Acetate
Concentration of acetate
temperature of the air at the time of sampling
air temperature
Air Temperature
AirTemp
Air_Temperature_Celcius
air temp
air_temp
information about treatment involving an exposure to varying temperatures; should include the temperature, treatment duration, interval and total experimental duration; can include different temperature regimens
air temperature regimen
AirTempRegm
air temp regm
air_temp_regm
aliphatic hydrocarbon concentration
total aliphatic hydrocarbons
alkalinity, the ability of a solution to neutralize acids to the equivalence point of carbonate or bicarbonate
alkalinity
Alkalinity
Alkalinity/VFA
alkalinity_microEquivalentPerLiter
aluminium concentration
Al(mol/dm3)
Aluminium
ammonium chloride concentration
ammonium chloride
concentration of ammonium
ammonium concentration
Ammonium (NH4)
Ammonium concentration
Ammonium
N (NH4)
ammonium (uM)
ammonium [ugN/gdw]
ammonium
nh4
ammonium nitrate concentration
Ammonium nitrate concentration
mean annual and seasonal precipitation (mm)
mean precipitation
AnnualSeasonPrecpt
annual and seasonal precipitation
annual season precipitation
annual season precpt
annual_precpt
annual_season_precpt
mean annual and seasonal precipitation
mean temperature
AnnualSeasonTemp
Temperature_avg
annual and seasonal temperature
annual season temp
annual season temperature
annual_season_temp
annual_temp
mean annual and seasonal temperature (oC)
mean annual and seasonal temperature
temperature_nodc_annual
temperature_nodc_monthly
anti-mitochondrial peptide nucleic acid concentration
mPNA_content
information about treatment involving antibiotic administration; should include the name of antibiotic, amount administered, treatment duration, interval and total experimental duration; can include multiple antibiotic regimens
antibiotic regimen
AntibioticRegm
antibiotic regm
antibiotic
antibiotic_regm
antibiotics
antibody description
antibody antibodydescription
antibody
antibody target description
antibody targetdescription
archaeal production
Archaeal Production
arsenic concentration
Arsenic concentration
Arsenic
baby birth delivery method
Birth_Route
birth delivery method
birth delivery
baby birth weight
birthweight_grams
baby gestational age
GA_days
GA_weeks
gestational age
baby gestational age of delivery
Gestational_age_delivery_in_weeks
bacterial production
bacteria_carb_prod
bacterial carbon production
bacterial_production
barium concentration
Barium concentration
Barium
benzene concentration
Benzene
bioavailable cadmium concentration
Cd_bioavailable
bioavailable Cd concentration
bioavailable chromium concentration
Cr_bioavailable
bioavailable lead concentration
Pb_bioavailable
bioavailable Pb concentration
bioavailable zinc concentration
Zn_bioavailable
bioavailable Zn concentration
biochemical oxygen demand
BOD
BiochemOxygenDem
biochem oxygen dem
biochem_oxygen_dem
Free-living ,place thery are living in, or from host (define relationship)
observed biotic relationship
BioticRelationship
Observed biotic relationship
biotic relationship
biotic_relationship
relations
original body habitat where the sample was obtained from
body habitat
Body site
BodyHabitat
BodySite
Compartment
Teeth samples
body site
bodySite
body_habitat
body_site
collection site
gut_physiology
host_body_habitat
host_body_site
material_location
sample source
tissue
substance produced by the body, e.g. stool, mucus, where the sample was obtained from
body product
Body product
BodyProduct
bio_material
body_product
host_body_product
matter
type_sample
describe side of sampling. right or left.
body side
BodySide
breeding method
breeding_method
concentration of bromide
bromide concentration
Bromide
Bromine concentration
bromide
cDNA purify method
LibrariesCdnaPurifMeth
cadmium concentration
Cadmium concentration
Cd_total
Total Cd concentration
total Cd concentration
total cadmium concentration
calcium carbonate concentration
calcium_carbonate
calcium carbonate content
Calcium carbonate (CaCO3) content average
concentration of calcium
calcium concentration
Ca(mol/dm3)
Calcium
calcium
calcium, mM
calcium_mg_per_l
calcium_partPerMillion
calcium_ppm
calcium_umole_per_kg
calcium fluoride concentration
CaF2
carbon concentration
C content
C(g/kg)
part_carb
particulate_carbon
percentage_c
tot_carb
total carbon concentration
total carbon
carbon dioxide concentration
Carbon dioxide
carb_dioxide
carb_dioxide_p_uatm
carbon_dioxide_c_kg_ha_day
pCO2 concentrations
carbon monoxide concentration
carb_monoxide
carotenoids concentration
carotenoids
cell description
cell growth phace
cell karyotype
cell lineage
cell line
cell_line
cell numbers
Cells
cell numbers average
cell numbers standard error
cell organism
cell sex
cell type
ArrayExpress-CellType
cell-type
cell_type
cells with high nucleic acid
Cells with High Nucleic Acid
cephalosporin regimen
cephalosporin
list of chemical compounds administered to the host or site where sampling occurred, and when (e.g. antibiotics, N fertilizer, air filter); can include multiple compounds. For Chemical Entities of Biological Interest ontology (CHEBI) (v1.72), please see http://bioportal.bioontology.org/visualize/44603
chemical administration
ChemAdministration
antibiotic_meds
chem administration
chem_administration
diabetes_medication
diabetes_medications
drug_usage
migraine_medications
describe state of environment or sample about related to specific chemical
chemical description
chip antibody
chip antibody vendor
chlordane concentration
Chlordane (Total isomers)
concentration of chloride
chloride concentration
Chloride
chloride
chloride_mg_per_l
chloride_ppm
chloride_umole_per_kg
chlorine concentration
Chlorine concentration
Residual chlorine
chlorophyll A concentration
Chlorophyll_a
chla
chlorophyll_a
chlorophylla
concentration of chlorophyll
chlorophyll concentration
Chl
Chlorophyll Sensor
Chlorophyll
Extracted chlorophyll
Sediment Chlorophyll a average
chlorophyll
chromium concentration
Chromium concentration
Cr_total
Total chromium
total chromium concentration
clay content
Clay (<4 micron diameter)
clay
percent_clay
treatment involving an exposure to a particular climate; can include multiple climates
climate
ClimateEnvironment
climate environment
climate_environment
cobalt concentration
Cobalt concentration
common name
COMMON_NAME
Common Name
common_name
properties that describe each chemical compounds concentration
concentration of chemical substance
copper concentration
Copper concentration
Copper
present state of sample site
current land use
CurLandUse
Current land use
cur land use
cur_land_use
vegetation classification from one or more standard classification systems, or agricultural crop
current vegetation
CurVegetation
cur vegetation
cur_vegetation
reference or method used in vegetation classification
current vegetation method
CurVegetationMeth
cur vegetation meth
cur_vegetation_meth
farming_practice
cyanide concentration
you should use msv:depth with xsd:maxInclusive .
depth end
Depth_end
depth_end
sediment_depth_end
you should use msv:depth with xsd:minInclusive .
depth start
Depth_start
depth_start
sediment_depth_start
dichloro diphenyl trichloroethane concentration
DDT (Total isomers)
DDT concentration
dieldrin concentration
concentration of diether lipids; can include multiple types of diether lipids
diether lipids concentration
DietherLipids
diether lipids
diether_lipids
dimethyl sulfide concentration
DMS
concentration of dissolved carbon dioxide
dissolved carbon dioxide concentration
DissCarbDioxide
diss carb dioxide
diss_carb_dioxide
dissolved carbon dioxide
concentration of dissolved hydrogen
dissolved hydrogen concentration
DissHydrogen
diss hydrogen
diss_hydrogen
dissolved hydrogen
dissolved inorganic carbon concentration
DissInorgCarb
Dissolved Inorganic Carbon
diss inorg carb
diss_inorg_carb
dissolved inorganic carbon
dissolved inorganic nitrogen concentration
dissolved inorganic phosphorus concentration
dissolved iron concentration
dissolved_jron_total
dissolved iron II concentration
Dissolved Iron (Fe II)
dissolved_iron_FeII
dissolved iron III concentration
dissolved nitrogen concentration
Tot_Diss_N
Total dissolved nitrogen (??mol N/ l)
Total dissolved nitrogen (?mol N/ l)
tot_diss_nitro
total dissolved nitrogen concentration
total dissolved nitrogen
total_dissolved_nitrogen
dissolved organic carbon concentration
Dissolved Organic Carbon
Dissolved organic carbon uM
diss_org_carb [estimated value]
diss_org_carb
dissolved organic carbon
dissolved_organic_carbon
dissolved organic nitrogen concentration
Dissolved Organic Nitrogen
diss_org_nitro
dissolved organic nitrogen
dissolved_organic_nitrogen
concentration of dissolved oxygen
dissolved oxygen concentration
DissOxygen
Dissolved Oxygen (mg/l)
Dissolved Oxygen
diss oxygen
diss_oxy
diss_oxygen (uM)
diss_oxygen mL/L
diss_oxygen
diss_oxygen(uM)
diss_oxygen_milliliterPerLiter
dissolved oxygen
dissolved_oxygen
dissolved phosphorus concentration
tot_diss_phosp
total dissolved phosphorus concentration
total_disssolved_phosphorus
drainage classification from a standard system such as the USDA system
drainage classification
DrainageClass
drainage class
drainage_class
drug allergy
drug_alrgs
measurement of dry mass
dry mass
DryMass
dry_mass
dust allergy
dust_alrgs
The altitude of the sample is the vertical distance between Earth's surface above Sea Level and the sampled position in the air.
environment altitude
Altitude (m)
Altitude
alt
alt_elev
altitude
environment altitude or depth
environment altitude or elevation
Geographic location (altitude/elevation)
alt elev
geographic location (altitude/elevation)
environment area
lake area
environment belly bright
belly_bright
environment bormann macroscopic classification
Bormann Macroscopic classification
environment breast bright
brreast_bright
environment bright
bright
environment building constructed time
year_constructed
environment conductance
Specific_Conductance
specific_conductance
environment conductivity
Conductivity
Sp Cond
conduc
conductivity
conductivity, milliseimenPerCentimeter
conductivity_milliseimen_per_cm
electrolytic_conductivity
spcond
whether or not crop is rotated, and if yes, rotation schedule
environment crop rotation
CropRotation
crop rotation
crop_rotation
history/crop rotation
how long do residents live?
environment current resident duration
current_residence_duration
Depth is defined as the vertical distance below surface, e.g. for sediment or soil samples depth is measured from sediment or soil surface, respectivly. Depth can be reported as an interval for subsurface samples.
environment depth
Core depth (1-2 cm), cold sediment
Core depth (1-2 cm), orange mat
Depth
Geographic location (depth)
Geographical location (Depth)
Sample Depth (ft)
Sample Depth (m)
Secchi Depth
Water Depth (ft)
Water Depth (m)
absolute_depth_beta
depth (m)
depth
depth(m)
depth_belowground
depth_category
geographic location (depth)
geographical location (depth)
sampling_depth
sediment_layer
string_depth
water depth
environment duration since wash
hours since wash
environment elevation
Elevation
Geographical location (elevation)
elev
elevation
elevation(m)
geographic location (elevation)
environment event duration
unusual physical events that may have affected microbial populations
environment extreme event
ExtremeEvent
extreme event
extreme_event
history/extreme events
how long is this sample feeded in bioreactor
environment feeding process duration
Feeding process
environment fermentation duration
period of fermentation
describe a stage of fermentation or some state
environment fermentation state
fermentation state
fermentation_state
environment fertilization use
fertilization use
fertilization
fertilizeration
history/agrochemical additions
environment fire history
fire
history/fire
historical and/or physical evidence of flooding
environment flood history
Flooding
flooding
history/flooding
environment general weather
General Weather
general weather
weather
environment humidity
Humidity
humidity
humidity_regm
trace_gas_percentl_moisture
tunnelhumidity
environment irradiance
Irradiance
irradiance
solar_irradiance
surf_irradiance
environment island size class
Island_size class
island size class
environment latitude
Collection Latitude
GPS Latitute S
Geographic location (Latitude)
Geographic location (latitude)
LATITUDE
Latitude (S)
Latitude End
Latitude Start
Latitude
geographic location (latitude)
lat
latitude
environment latitude and longitude
Geographic location (latitude and longitude)
Geographic location (latitude, longitude)
Geographical location (lat_lon)
LAT_LON
Lat_Lon
Latitude and longitude
Lattitude and logitude
geo_loc_name_coord
geographic location (latitude and longitude)
geographical location (longitude and longitude)
geographical_origin
lat lon
lat-lon
lat_Long
lat_lan
lat_lon (N:W)
lat_lon
latitude and longitude
submitted_lat_lon
environment latitude by degrees, minutes and seconds
latitude by degrees, minutes and seconds
environment latitude by decimal
latitude by decimal
environment latitudinal degrees
Latitudinal Degrees
latitudinal degrees
environment latitudinal minute
Latitudinal Minute
latitudinal minute
environment latitudinal second
Latitudinal second
latitudinal second
environment longitude
Collection Longitude
GPS Longitude W
Geographic location (Longitude)
Geographic location (longitude)
LONGITUDE
Longitude (W)
Longitude End
Longitude Start
Longitude
geographic location (longitude)
lon
long
longitude
environment longitude by degrees, minutes and seconds
longitude by degrees, minutes and seconds
environment longitude by decimal
longitude by decimal
environment longitudinal degrees
Longitudinal Degrees
longitudinal degrees
environment longitudinal minutes
Longitudinal Minutes
longitudinal minutes
environment longitudinal seconds
Longitudinal Seconds
longitudinal seconds
environment nitrogen fertilization
Nitrogen_Fertilization
environment nutrient description
mineral_nutr_regm
nutrient description
number of occupants present at time of sample within the given space
environment occupancy at sampling
OccupSamp
occup samp
occup_samp
occupancy at sampling
environment photosynthetically active radiation
PAR
par_irradiance
photosynthetically active radiation
environment photon flux density
PFD
light intensity
photon flux density
describe the location pet always lives in house
environment pet house location
environment pet type
pet
pet_farm_animal
environment plant growth stage
plant growth stage
plant_stage
describe there are how many people being in environment
environment population
population
roommates
environment porosity percentage
porosity of sediment (%)
porosity
porosity, %
describe how many rains
environment precipitation amount
Precipitation
precipitation (48 hours) inches
precipitation
environment precipitation state
Precip_Treatment
precipitation state
pressure to which the sample is subject, in atmospheres or in water, etc
environment pressure
Barometric Pressure (mbar)
CTDPRS
Pressure
atm_press
atm_pressure
barometric_press
ctd pressure
pressure
pressure, decibar
pressure_Mpa
describe a method of reclamation(e.g. crosspit spreader, mixed overburden)
environment reclamation type
reclamation type
partial vapor and air pressure, density of the vapor and air, or by the actual mass of the vapor and air
environment relative air humidity
Air Relative Humidity
RelAirHumidity
RelativeAirHumidity
rel air humidity
rel_air_humidity
relative air humidity
environment season
season_environment
the direction a slope faces. While looking down a slope use a compass to record the direction you are facing (direction or degrees); e.g., NW or 315 degrees. This measure provides an indication of sun and wind exposure that will influence soil temperature and evapotranspiration.
environment slope aspect
SlopeAspect
slope aspect
slope_aspect
commonly called slope. The angle between ground surface and a horizontal line (in percent). This is the direction that overland water would flow. This measure is usually taken with a hand level meter or clinometer.
environment slope gradient
SlopeGradient
slope gradient
slope_gradient
the time activated sludge remains in reactor
environment sludge retention time
SludgeRetentTime
sludge retent time
sludge retention time
sludge_retent_time
this describe a size of each soil
environment soil fraction
Soil Fraction class (µm)
soil fraction
soil_fraction
concentration of substances including a wide variety of material, such as silt, decaying plant and animal matter, etc,; can include multiple substances
environment suspended solids
SuspendSolids
suspend solids
suspend_solids
environment temperature
CTDTMP
T (oC)
Temp
Temp. average
Temp_AM
Temp_PM
Temperature (C)
Temperature (deg C)
Temperature at the time of sampling
Temperature
ctd temperature
fermentation temperature
porttemp
sample temperature (C)
sample temperature
temp (C)
temp
temp, degrees C
temp_degrees_C
temperature
trace_gas_soil_temp
tunneltemp
environment texture percent clay
Texture - percent clay
environment texture percent sand
Texture - percent sand
environment texture percent slit
Texture - percent silt
environment throat bright
throat_bright
note method(s) used for tilling
environment tillage type
Tillage
history/tillage
tillage
specification of the time since last toothbrushing
environment time since last toothbrushing
TimeLastToothbrush
time last toothbrush
time since last toothbrushing
time_last_toothbrush
environment vent bright
vent_bright
ventilation system used in the sampled premises
environment ventilation type
VentilationType
ventilation type
ventilation_type
environment water source type
environment wave height
Wave height (m)
tidal stage
tidal_stage
wave height
environment wind direction
wind direction
wind_direction
environment wind speed
Wind Speed (kts)
Wind Speed
wind speed
wind_speed
environment window opened duration
days_windows_open
PMID or url for isolation and growth condition specifications .surface materials at the point of sampling.type of indoor surface
environment
Biome
Ecosystem Category
Ecosystem Subtype
Ecosystem Type
Ecosystem
Environment (Biome)
Environment (Feature)
Environment (Material)
Environment (biome)
Environment (feature)
Environment (featurel)
Environment (material)
Environment
Feature
Habitat Type
Habitat
ISOLATION_SOURCE
IndoorEnvironment
Inoculum source
IsolGrowthCondt
Isolation source
Isolation
Land Use (developed/undeveloped)
Material Type
Material
OutdoorEnvironment
SAMPLE_ISOLATION
Sample Body Subsite
Sample Type
Sample material
Sample resource
Sample type
SampleRegion
SampleType
Sample_Type
Site
Site_description--Other
Specific Ecosystem
Substrate
Type_of_Sample
Water condition
biome
collected_material
electrode
env_biome
env_biome_term
env_feature
env_feature_term
env_material
env_matter
env_matter_term
environment (biome)
environment (feature)
environment (material)
environment biome
environment location
environment_biome
environmental biome
environmental_material_level
environmental_sample
envo_biome
envo_feature
envo_material
field_notes
genericdescription
habitat
harvest_group
indoor surface
indoor_surf
isol growth condt
isol_growth_condt
isolation and growth condition
isolation source
isolation-source
isolation_source
material
metagenome_source
microbial_mat
origin
owner
reference for biomaterial
room
sample type
sample-type
sample_group
sample_group_allskin
sample_type
sample_type_beta
site_sampled
source1
strains
tissue source
describe agrochemical using status in sampling environment
environment agrochemical use
agrochem addition
agrochem_addition
agrochemical use
describes plant name associated with environment
environment associated vegetation
associated_plant
associated_vegetation
environment color
ColorDescription
color description
water_color
environmental description
site_description
environment ID
Cage number
Cage
cage
house
houseid
environment numeric data
environment state
environment water flux
Conditioning hydraulics
environmental package
Enviornmental package
Environmental Package
Environmental package
MIGS env_package
env_package
environmental_package
model
ethanol concentration
Concentration of ethanol
Ethanol concentration
ethanol
ethyl benzen concentration
experiment adapter sequence
Adapters
LibrariesAdapters
adapter sequence
experiment amplification cycle
Amplification
amplification cycle
experiment barcode name
BarcodeName
Sample_Barcode_Name
barcode name
barcode_label
barcode_number
experiment barcode sequence
Barcode Sequence
Barcode
BarcodeSequence
Multiplex identifiers
Sample_Barcode_Sequence
barcode - sff file
barcode - sff
barcode sequence
barcode
multiplex identifier
multiplex identifiers
experiment bases
Library reads sequenced
Total bases
bases
library reads sequenced
total bases
experiment DNA quantity
DNA quantity
Qubit_reading(ng/ml)
dna_conc
dna_quant
describe a amount of biological replicate made from same sample
experiment replicate number
number_biological_replicates
replicate description
replicate number
were multiple DNA extractions mixed? how many? Ordinary 16S gene sequence analysis, some of DNA from multiple samples are pooled in a solution. After sequenced, each sequences are assigned to each samples by using adapter and barcode sequence. So this sample describe how many samples were stacked in one DNA sequencing
experiment extracted DNA number in run
PoolDnaExtracts
Pooling of DNA extracts (if done)
pool dna extracts
pool_dna_extracts
pooled
pooling of DNA extracts (if done)
pooling of DNA extracts
pooling of dna extracts (if done)
pooling of dna extracts
experiment filter size
Filter_Size
filter size
filter_max
filter_min
max_filter_size
min_filter_size
experiment filtered quantity
Total vol. H2O filtered (L)
filtered water quantity
experiment host amount for DNA
number of ants pooled for DNA sample
number of aphids pooled for DNA sample
experiment incubation duration
Incubation time
Incubation_days
Pre-incubation duration (days)
Time of incubation
incubation duration
incubation time
time of incubation
experiment incubation temperature
Pre-incubation temperature (°C)
incubation temperature
incubation_temperature
Sample type, such as cell culture, mixed culture, tissue sample, whole organism, single cell, metagenomic assembly
experiment investigation type
BI GSSR sample type
Investigation Type
Investigation type
LibrariesInvestigationType
LibrariesType
datatype description
datatype
genetic_material
investigation type
investigation_type
invetigation_type
molecular data type
project_type
describe taxonomy which is using for shotgun library construction
experiment library host name
Library host
library host name
library host
experiment library screening strategy
library screening strategy
library_selection
experiment library size
library size
experiment library vector
Library vector
library vector
experiment material vendor name
Filter_Manufacturer
antibody vendor name
antibody vendor
antibody vendorname
material vendor name
experiment PCR description
pcr conditions
experiment primer name
Primer Set
primer name
primer_name
experiment primer sequence
Linker Primer Sequence
LinkerPrimerSequence
PCR primer
PCR primers
Primer
pcr primer
pcr primers
pcr_primer
pcr_primers
primer sequence
primer
experiment RNA treatment
rna treatment
rna-treatment
experiment read number
Number of reads sequenced
Number of reads
Total points
Total spots
spots
describe a ID of sample about biological replicates
experiment replicate ID
Biological_replicate
Number of the biological replicate
Replicate
Replication #
biological_replicate
replicate_number
experiment sequence center
RUN_CENTER
STUDY_CENTER
Sequencing Center
sequence center
sequencing center
describe a fraction size to separate specific microorganisms
experiment size fraction
Size Fraction (um)
Size fraction (um)
size fraction
size fraction_microns
size_fraction
experiment target gene
LibrariesTargetGene
Target Gene
Target gene
primer_target
target gene
target_gene
experiment target molecules
Molecule
analyte type
analyte_type
molecule subtype
rna subtype
target molecules
target-molecules
target_molecules
experiment target organism
target organism
experiment target subfragment
16S_region
16SrDNA sequence region
Amplicon target
Target subfragment
cntry_targ_subfrag_2
country_target_subfragment
target_loci
target_locus
target_subfragment
target_subfragment_usa
experiment treatment description
Pre-treatment
Treatment group
Treatment
group_event_treatment
group_treatment
pre-treatment
pre_treatment
sample treatment
secondary treatment
secondary_treatment
treated with
treatment description
treatment protocol of gut microbiome
describe about experiment in laboratory
experiment description
experiment factor
Experimental Factor
ExperimentalFactor
experimental factor
experimental_factor
experiment method
experiment protocol
Protocol Label
sop
extinction coefficient
light_ext_coeff_meter-1
family adult percent
percent_adult_residents
a unique identifier by which each family of subject can be referred to, de-identified, e.g. #131
family ID
Family
family
family male percent
percent_male
soil classification from the FAO World Reference Database for Soil Resources
FAO classification
FaoClass
fao class
fao classification
fao_class
soil taxonomic/fao classification
soil_taxonomic/FAO classification
feature
fiber content
Fiber
contained fiber
fiber_grams
flu vaccine history
flu_vaccine_date
fluorescence
Fluorescence (micro g/l)
Fluorescence (ug/l)
Fluorescence
fluorine concentration
Fluorine
food allergy
foodallergies_other
foodallergies_other_text
forward adapter sequence
adapter-forward
forward barcode sequence
LibrariesForwardBarcodes
foward primer name
Forward primer used
non_barcoded_primer_name
forward primer sequence
Forward primer
LibrariesForwardPrimers
forward primer
forwardPrimer
forward_primer_1
forward_primer_2
fwd_PCR_primer
library forward primer
non_barcoded_primer
fructose concentration
Concentration of fructose
glucose concentration
Concentration of glucose
gold concentration
Gold concentration
grain content
gravel content
Gravel
has BioProject ID
Bioproject Accession
bioproject accession
bioproject id
bioproject
has BioProject accession
has BioSample ID
biosample
has DOI
GOLD ID
has GOLD ID
LibrariesGoldId
human microbial project ID
has HMP ID
HMP ID
has IMG ER project ID
IMG ER Project ID
IMG ER project ID
has IMG ER sample ID
IMG ER Sample ID
IMG ER sample ID
has IMG Genome ID
IMG Genome ID
has IMG ID
has IMG submission ID
IMG Submission ID
IMG submission ID
has JGI project ID
JGI Project ID
JGI project ID
has MG-RAST ID
EnvPackage MGRASTID
EnvPackage SamplePackageID
MG-RAST ID
MGRASTID
RAST ID
library ID in MG-RAST
has MG-RAST library ID
LibrariesID
LibrariesMgrastId
LibraryData LibrariesID
LibraryData LibrariesMgrastId
has MG-RAST project ID
DataMgrastId
ProjectData DataMgrastId
ProjectData ID
use to indicate sample ID in MG-RAST
has MG-RAST Sample ID
MgrastId
SampleData MgrastId
SampleData SampleID
has NCBI ID
NCBI ID
NcbiId
has proposal GOLD ID
Proposal GOLD ID
proposal GOLD ID
has PubMed ID
LibrariesPubmedId
pmid
has Qiime ID
QiimeId
has Refseq project ID
Refseq Project ID
Refseq project ID
refseq project id
This ID is assigned by each submission .
has SRA ID
has SRP ID
GenBank Project ID
NCBI Project ID
Sample NCBI Project ID
has GenBank Project ID
has SRR ID
has SRX ID
has sample GOLD ID
Sample GOLD ID
sample GOLD ID
has sample package ID
SamplePackageID
sample package ID
has taxon ID
NCBI Taxon ID
TAX_ID
Taxon ID
taxon ID
taxon id
taxon_id
has VAMPS ID
VampsId
vamps ID
methods of conditioning or heating a room or building
environment heat and cool type
HeatCoolType
heat and cool type
heat_cool_type
heating and cooling system type
heavy metals present and concentrationsany drug used by subject and the frequency of usage; can include multiple heavy metals and concentrations
heavy metals description
HeavyMetals
extreme unusual properties/heavy metals
extreme_unusual_properties/heavy metals
heavy metals
heavy_metals
reference or method used in determining heavy metals
heavy metals method
HeavyMetalsMeth
extreme unusual properties/heavy metals method
extreme_unusual_properties/heavy metals method
heavy metals meth
heavy_metals_meth
height
height_meter
measurement of height or length
height or length
HeightOrLength
height_or_length
heptachlor concentration
heptachlor epoxide concentration
hexachlorobenzene concentration
home type
home_type
specific layer in the land area which measures parallel to the soil surface and possesses physical characteristics which differ from the layers above and beneath
horizon
Horizon
reference or method used in determining the horizon
horizon method
HorizonMeth
horizon meth
horizon_meth
age at the time of sampling; relevant scale depends on species and study, e.g. could be seconds for amoebae or centuries for trees
host age
AGE
Age (years)
Age
age
age_in_years
age_range
host_age
host age days
AgeDays
age days
host age months
age_months
host alcohol drinking type
Bingeing
host alcohol drinks frequency
host allergy status
Allergy status
allergies
allergy status
host arm circumference
arm circumference
mid_upper_arm_circumference
body mass index, calculated as weight/(height)squared
host BMI
BMI
BodyMassIndex
PrePregnancy_BMI
bmi
body mass index
body-mass index
body_mass_index
host_body_mass_index
host birth date
Date of Birth
birth_date
resting diastolic blood pressure, measured as mm mercury
host blood pressure diastolic
BloodPressDiast
blood press diast
blood pressure diastolic
blood_press_diast
resting systolic blood pressure, measured as mm mercury
host blood pressure systolic
BloodPressSyst
blood press syst
blood pressure systolic
blood_press_syst
core body temperature of the host when sample was collected
host body temperature
HostBodyTemp
body temperature
host body temp
host_body_temp
host breed
breed
host_breed
describe a percent of calories ratio in diet from carbohydrate
host calories from carbohydrate percent
carbohydrate_per
describe a percent of calories ratio in diet from fat
host calories from fat percent
fat_per
describe a percent of calories ratio in diet from protein
host calories from protein percent
protein_per
host cholesterol HDL level
HDL_level
cholesterol HDL level
host cholesterol LDL level
cholesterol LDL level
host cholesterol level
cholesterol level
lvCholesterol
host clade
host_major_clade
the color of host
host color
HostColor
host_color
host contact frequency with pet
pet_contact
host contraceptive use
contraceptive
host cranial nerve status
host days after inoculation
Days_post_inoculation
days after inoculation
days_post_inoculation
host days with cough
days with cough
days_with_cough
host days with diarrhea
days with diarrhea
days_with_diarrhea
host days with fever
days with fever
days_with_fever
host days with vomiting
days with vomiting
days_with_vomiting
host dental pocket depth
PocketDepth
dental pocket depth
periodontal-depth
host denture down state
host denture state
host denture up state
host deoderant use
deodorant_use
host description
host diabetes status
diabetes
diabetes-status
host diagnosed date
diabetes_diagnose_date
host diet
Diet
Dietary treatment
Dietary_Treatment
Feed
diet
diet_description
diet_type
feed
host_diet
host_treatments
primary_carb
primary_vegetable
host diet restriction
diet_restrictions
host disease stage
disease-stage
disease_stage
host disease state
ArrayExpress-DiseaseState
Demented
Disease status
Disease
DiseaseStat
Disease_State
Health Status
Health_status
Histology
Macroscopic diagnosis
OPERATIVE_FINDINGS
PATHOLOGY
PID
antibiotic_condition
condition
disease stage
disease status
disease
disease_stat
disorder
health condition
health or disease status of specific host at time of collection
health state
health status
health-state
health_state
host disease
host health state
host_disease
host_disease_state
study disease
subject_disease_type
host disease symptom frequency
migraine_frequency
host domain
domain
host dominant hand
dominant hand
dominant_hand
host ethnicity
Ethnicity
Host Ethnicity
IHMC ethnicity
IhmcEthnicity
ethnic_group
ethnicity
ihmc_ethnicity
host event duration
host exercise frequency
exercise_frequency
host family
host_family
host family relationship
FamilyRelationshipValue
family relationship value
family relationship
family_relationship
host_family_relationship
role
host flossing frequency
flossing_frequency
host gape width length
gape width length
gape_width_mm
history of gastrointestinal tract disorders; can include multiple disorders
host gastrointestinal tract disorder
GastrointestDisord
gastrointest disord
gastrointestDisord
gastrointest_disord
gastrointestinal tract disorder
host general medicine
general_meds
host generally drinking water source
drinking_water_source
host genotype
ArrayExpress-Genotype
Genotype
crop_sequence
genotype
genotype/variation
genotype_all
group
host_genotype
whether or not subject is gravid, and if yes date due or date post-conception, specifying which is used
host gravidity
Gravidity
gravidity
pregnancy
pregnant
literature reference giving growth conditions of the host
host growth condition
Growth_condition
Growth_protocol
HostGrowthCond
HostGrowthCondition
host growth cond
host growth conditions
hostGrowthCondition
host_growth_cond
host HIV status
HIV status
HIV
hiv
hiv_stat
host_hiv_stat
host has parasites
a unique identifier by which each subject can be referred to, de-identified, e.g. #131
host ID
Animal ID
Animal Number
Dog
Horse
Host subject id
HostIndividual
HostSubjectId
Individual
Macaque id
Mouse ID
Patient
Subject id
SubjectID
animal
cowID
gap_subject_id
healthy adult
host subject ID
host subject id
host_id
host_number
host_subject_id
individual
mouse
mouse_id
patient id
patient number
patient
study_subject_id
subject ID
subject_number
submitted subject id
submitted_subject_id
Taxonomy that involved in host.
host related taxon ID
host last meal
LastMeal
host_last_meal
last_meal
host length
host_length
host length of gill ranker
gill_raker_length_mm
length of gill ranker
description of life stage
host life stage
LifeStage
age_group
agegroup
dev-stage
dev_stage
development stage
host development stage
host_development_stage
host_life_stage
life stage
life_stage
lifestage
history of liver disorders; can include multiple disorders
host liver status
LiverDisord
liver disord
liver disorder
liver_disord
host lung/pulmonary status
lung/pulmonary disorder
this indicates how host takes nucrient against macronutrient demand
host macronutrient demand percent
macronutrient_pct_total
host medicine use
host menopause stage
Menopause Stage
menopause stage
host mental status
Cognitive
host psychosis
This index show how status of cancer is critical
host morphology index
morphology index
morphology_index
host name
ArrayExpress-Species
HOST
Host (scientific name)
Host Name
Host common name
Host
HostCommonName
Source
SpecificHost
Specific_host
Specimen
host common name
host
host_common_name
host_organism
obtained_from
source
source_name
specific host
specific-host
specific_host
specimen voucher
specimen_voucher
history of nose/mouth/teeth/throat disorders; can include multiple disorders
host nose/mouth/teeth/throat status
NoseMouthTeethThroatDisord
NoseMouthTeethThroatDisorder
nose mouth teeth throat disord
nose/mouth/teeth/throat disorder
nose_mouth_teeth_throat_disord
The Nugent Score is a Gram stain scoring system for pap tests to diagnose bacterial vaginosis.
host nugent score
Nugent Category
Nugent
Nugnet_Score
nugent score
host number of children
no_kids
number of children
number_children
host number of coronal carries
CoronalCaries
number of coronal carries
host number of filled tooth
filled
number of filled tooth
host number of gill raker
number of gill raker
host number of residents
no_people
number of residents
number_residents_human
host numeric data
host occupation
host_occupation
host order
host_order
host palm size
PalmSize
palm size
type of perturbation, e.g. chemical administration, physical disturbance, etc., coupled with time that perturbation occurred; can include multiple perturbation types
host perturbation
Perturbation
migraine_factor_1
migraine_factor_2
migraine_factor_3
perturbation
An index for estimating the status of oral hygiene by measuring dental plaque that occurs in the areas adjacent to the gingival margin.
host plaque index
plaque index
describe how often host go swiming
host pool frequency
pool frequency
host pregnant due date
pregnant due date
pregnant_due_date
host pregnant outcome
describe a percent of protein ratio in diet from animal
host protein from animal percent
animal_per
describe a percent of protein ratio in diet from plant
host protein from plant percent
plant_per
host race
Race
race
race_other
host reproductive condition
host_attribute
host_reproduction_status
reproductiv_condition
reproductive condition
host serotype
SEROTYPE
SEROVAR
serovar
physical sex of sampled organism
host sex
ArrayExpress-Sex
GENDER
Gender
Host Gender
HostSex
Mouse_Sex
SEX
Sample Host Gender
Sex
donor sex
experimental factor: sex
gender
host_sex
sample gender
sample sex
sex
host sexual orientation
is_gay
sexual orientation
morphological shape of host
host shape
HostShape
affection_status
body_type
host_shape
host skin condition
skin condition
host skin status
footeczema
skin disorder
host sleep duration
sleep duration
sleep_duration
host smoke frequency
Current_smoking
smoke frequency
smoking frequency
host smoker type
host special diet
special diet
special_diet
host species
Host Species
HostSpecies
Species
host_species
species
host state
Status
host condition
status
host strain
Mouse_Strain
STRAIN
Strain
host organism
host plant
host_strain
mice_from
strain background
strain description
strain
NCBI taxonomy ID of the host, e.g. 9606
host taxon ID
HOST_TAXID
Host taxID
HostSpecRange
HostTaxid
HostTaxonId
Sample Host NCBI Taxon iD
host id
host ids
host spec range
host specificity or range
host tax id
host tax-id
host taxid
host taxon id
host taxonomy ID
host taxonomy id
host_tax_id
host_taxid
host_taxon_ID
host_taxon_id
taxonomy name of sampled host
host taxonomy name
host tumor status
tumor status
host twin type
twin type
host urine/urogenital tract status
urine/urogenital tract disorder
host viral load
HIV_viral_load
viral load
viral_load_value
host water in body
bodywt_kg
host wing length
wing_length
humidifier type
humidifier_type
hydrogen concentration
hydrogen sulfide concentration
Hydrogen Sulfide (H2S)
Hydrogen sulphide concentration
percentage of industrial effluents received by wastewater treatment plant
industrial effluent content
IndustEffPercent
indust eff percent
indust_eff_percent
industrial effluent percent
taxonomic information subspecies level
infra specific name
InfraSpecificName
infra_specific_name
taxonomic rank information below subspecies level, such as variety, form, rank etc.
infra specific rank
InfraSpecificRank
infra_specific_rank
inorganic carbon concentration
inorganic nitrogen concentration
inorganic phosphorus concentration
iron concentration
Fe(tot_
Iron (Fe)
Iron concentration
Iron in groundwater
Iron
iron II concentration
Fe(II)
iron_II
iron_II_mg_per_l
iron_II_umole_per_kg
iron III concentration
this indicate name of journal name (e.g. Nature, Science, Cell, PNAS)
journal name
lactate concentration
Concentration of lactate
leucine concentration
LEUCINE
Leucine
leucine
library construction method
Library construction method
library ribosome rna removal method
LibrariesRrnaRemovalMeth
library ribosome rna remove method
library size mean
LibrariesLibSizeMean
libraries library size mean
lindane concentration
Lindane
link to digitized soil maps or other soil classification information
link to classification information
LinkClassInfo
link class info
link_class_info
link to climate resource
link to climate information
LinkClimateInfo
link climate info
link_climate_info
local classification
LocalClass
local class
localClass
local_class
soil taxonomic/local classification
reference or method used in determining the local soil classification
local classification method
LocalClassMeth
local class meth
local_class_meth
soil taxonomic/local classification method
This describe uniq name of each site.
location
Area
COUNTRY
Collection Location
Collection place
Continent
Country
Culture origin
General Area
Geo_loc_name
Geographic Location
Geographic location (Country)
Geographic location (area)
Geographic location (country and/or sea,region)
Geographic location (country)
Geographic location (country:region,area)
Geographic location (locality)
Geographic origin
GeographicLocation
Geographical location (country:region, location)
Geographical location
Geogrphic location (country and/or sea, region)
Geophic Location
Isolation Country
Isolation Site
Location
Marine Region
NATION
Ridge
SAMPLE_CENTER
SAMPLE_LOCATION
Sample Location Full Name
Sample Location Name
Sample Location
Sample Site
Sample site
Sampling Station
Vent
birth_location
city
collection_loc
collection_location
continent
country
general_location
geo_loc
geo_loc_name
geographic location (Country)
geographic location (country and/or sea,region)
geographic location (country and/or sea region)
geographic location (country and/or sea
geographic location (country and/or sea)
geographic location (country and/or sea, region)
geographic location (country)
geographic location
geographic_location
geological_location_name
iho_area
lake_name
loc_name
location details
longhurst_long
longhurst_zone_code
lter_station_name
meam
mouse batch
naerly located
nearly located
ocean_basin
park
reference_name
regime (bottom depth)
sample location
sample_location
sample_site
sample_state
sampled borehole site
sampling site
seamount
state
vent_field
village
pneumoniaStatus
pneumonia_status
concentration of magnesium
magnesium concentration
Magnesium
Mg(cmol/dm3)
magnesium
magnesium_partPerMillion
manganese concentration
Manganese (Mn)
Manganese concentration
Manganese
manganese_dival_uM
mannitol concentration
Concentration of mannitol
material content percentage
maximum temperature
Temperature_maximum
mercury concentration
Mercury
methane (gas) amount or concentration at the time of sampling
methane concentration
Methane (CH4)
Methane concentration (nM)
Methane
methane
methane, mmol/L
methane_c_g_ha_day
methoxychlor concentration
Methoxychlor
the part of the organic matter in the soil that constitutes living microorganisms smaller than 5-10 micrometer. IF you keep this, you would need to have correction factors used for conversion to the final units, which should be mg C (or N)/kg soil).
microbial biomass
Microbial biomass
MicrobialBiomass
microbial_biomass
microbial_biomass_microscopic
microbial biomass C
microbial_biomass C (mg/kg)
reference or method used in determining microbial biomass
microbial biomass method
Method for determining microbial biomass
MicrobialBiomassMeth
microbial biomass meth
microbial_biomass_meth
microbial biomass N
microbial_biomass N (mg/kg)
minimum temperature
Temperature at bottom
mites allergy
mold allergy
mold_alrgs
metagenome sample vocabulary property
mud content
mud content average
Mud Average
mud content standard deviation
Mud Standard Deviation
nickel concentration
Nickel concentration
nitrate and nitrite concentration
Nitrate (NO3) and Nitrite (NO2)
Nitrite Nitrate
nitrite_plus_nitrate
no2no3
concentration of nitrate
nitrate concentration
N (NO3)
Nitrate (??mol/ l)
Nitrate (?mol/ l)
Nitrate (NO3)
Nitrate (_mol/ l)
Nitrate Sensor
Nitrate
nitrate (uM)
nitrate [ugN/gdw]
nitrate
nitrate(uM)
nitrate_nodc_annual
nitrate_nodc_monthly
nitrate concentration in groundwater
Nitrate in groundwater
concentration of nitrite
nitrite concentration
Nitrite (??mol/ l)
Nitrite (?mol/ l)
Nitrite (NO2)
Nitrite
nitrite
nitrite(uM)
nitrite, uM
nitrogen 15 concentration
nitrogen_15
concentration of nitrogen (total)
nitrogen concentration
N content
N(g/kg)
Nitro
Tot-N
Total Nitrogen
Total nitrogen
extractable_nitrogen
nitro
nitrogen
particulate_nitrogen
percentage_n
tot_n (g/kg)
tot_n
tot_nitro
total N
total n
total nitrogen
total_nitrogen
nucleic acid amplification method
LibrariesCdnaAmpfMeth
Nucleic acid amplification
nucl_acid_amp
nucleic acid amplification
nucleic acid extraction method
Acronym of the used DNA extraction method
DNA extraction method
DNA_extraction
DNA_extraction_method
Extract_protocol
Extraction method
LibrariesNuclAcidExt
Nucleic acid extraction
RNA_isolation
dna_extraction_meth
extraction_method
library nucleotid acid extraction
libraryNucleicAcidExtraction
nucl_acid_ext
silica-gel membrane extraction
concentration of organic carbon
organic carbon concentration
OrgCarb
TOC
TotOrgCarb
org carb
org_carb
organic carbon
percent_org_carb
tot org carb
tot_org_c
tot_org_carb
tot_org_carb_perc
total organic carbon
organic carbon concentration in soil
Soil organic carbon
It indicates how many kilograms of organic dry solids are loaded per m3 of digester volume and unit of time.
organic load rate
Organic load rate
organic loading rate
organic matter average
Total organic matter average
concentration of organic matter
organic matter concentration
OrgMatter
org matter
org_matter
org_matter_g_per_m2
organic matter
total organic matter concentration
organic matter content
soil organic matter content
total organic matter ( %)
concentration of organic nitrogen
organic nitrogen concentration
OrgNitro
org nitro
org_nitro
organic nitrogen
total organic nitrogen concentration
total organic nitrogen
organic phosphorus concentration
total organic phosphorus concentration
oxygen apparent utilization
Apparent Oxygen Utilization
apparent oxygen utilization
oxygen concentration
CTDOXY
Oxygen (O2)
Oxygen (mg/L)
Oxygen Sensor
Oxygen
ctd oxygen
oxygen
oxygen_mass
Oxygen saturation is a term referring to the fraction of oxygen-saturated hemoglobin relative to total hemoglobin (unsaturated + saturated) in the blood.
oxygen saturation
oxy_sat
pH measurement
LabPH
PH_GLOVE
pH_AM
pH_PM
ph_cat_group
ph_category
reference or method used in determining pH
pH method
PhMeth
ph meth
ph method
ph_meth
phosphono peptide nucleic acid concentration
pPNA_content
this indicate name of related paper .
paper title
concentration of particulate organic carbon
particulate organic carbon concentration
POC
PartOrgCarb
part org carb
part_org_carb
part_org_carv
particulate organic carbon
concentration of particulate organic nitrogen
particulate organic nitrogen concentration
PON
PartOrgNitro
part org nitro
part_org_nitro
particulate organic nitrogen
penicillin regimen
penicillin
peptide nucleic acid concentration
peroxides concentration
pet allergy
petroleum hydrocarbon content
petroleum hydrocarbon
phaeopigment concentration
Phaeopigments
Sediment Phaeopigments average
phaeopigments
phenolic content concentration
Total phenolic content
total phenolic content concentration
pheophytin A concentration
Phaeophytine a
concentration of phosphate
phosphate concentration
Phosphate (??mol/ l)
Phosphate (?mol/ l)
Phosphate (PO4)
Phosphate
TotPhosphate
phosphate
po4
tot phosphate
tot_phosphate
total phosphate
concentration of phospholipid fatty acids; can include multiple values
phospholipid fatty acid concentration
PhosplipidFattAcid
phospholipid fatty acid
phosplipid fatt acid
phosplipid_fatt_acid
phosphorus concentration
P(mg dm3)
Phosphates
Phosphorus concentration
Tot-P
Total Phosphorus
Total phosphorous
phosphorus
tot_P
tot_phosp
total phosphorus
totp
phosphorus oxide concentration
P2O5
name of body site that the sample was obtained from. For Plant Ontology (PO) (v 20) terms, see http://purl.bioontology.org/ontology/PO
plant body site
PlantBodySite
plant_body_site
pollen allergy
pollen_alrgs
concentration of potassium
potassium concentration
K(mg/dm3)
Potassium
potassium
potassium_mg_per_l
potassium_partPerMillion
potassium_umole_per_kg
previous land use and dates
previous land use
Previous land use
PreviousLandUse
history/previous land use
previous_land_use
reference or method used in determining previous land use and dates
previous land use method
PreviousLandUseMeth
history/previous land use method
previous land use meth
previous_land__use_meth
previous_land_use_meth
measurement of primary production
primary production
PrimaryProd
PrimaryProduction
primary prod
primary_prod
probiotic treatment
cross-sectional position in the hillslope where sample was collected.sample area position in relation to surrounding areas
profile position
ProfilePosition
profile_position
project description
DataProjectDescription
ProjectDescription
project name
DataProjectName
Project / Study Name
Project Name
Project name
ProjectName
Study Name
project_name
study name
study_name
describe published (be public) date in database .
published date
quinoline concentration
quinoline
raio uranium IV to total uranium
U(IV)/ Total U
describe bacterial carbon average µg per gram dry weight
ratio bacterial carbon to dry weight
bacterial carbon average
ratio bivalent iron to total iron
Fe(II)/ Total Fe
bivalent iron to total iron ratio
bivalent iron total iron ratio
ratio carbon to nitrogen
carb_nitro_ratio
carbon nitrogen ratio
carbon to nitrogen ratio
carbon/nitrogen ratio
carbon/nitrogen ration
org_carb_nitro_ratio
ratio carbon nitro
ratio carbon to nitro
ratio_carbon_nitro
anaerobic digesters can be designed and engineered to operate using a number of different process configurations, as batch or continuous, mesophilic, high solid or low solid, and single stage or multistage
reactor type
ReactorType
reactor_type
describe received (first committed) date in database .
received date
redox potential
Oxidation Reduction Potential
redox
redox_potential
sediment redox (mV)
water redox (mV)
whether oxic, or reducing?
redox state
redox_state
oxygenation status of environment. For example , aerobic or anaerobic .
relationship to oxygen
OxyStatSamp
RelToOxygen
host oxygen status
oxy stat samp
oxy_stat_samp
oxygen status of sample
oxygenation status of sample
rel to oxygen
rel_to_oxygen
release date
Release Date
describe URL related to sample, experiment, environment or host information .
relevant electronic resources
Relevant electronic resources
additional metadata at:
resistivity
reverse adapter sequence
adapter-reverse
reverse barcode sequence
LibrariesReverseBarcodes
reverse_barcode
reverse primer name
Reverse Primer Used
reverse_primer_name
reverse primer sequence
LibrariesReversePrimers
ReversePrimer
library reverse primer
rev_PCR_primer
reverse primer
reverse_primer
reverse_primer_1
reverse_primer_2
reverseprimer
rock type
lithology
rock_type
measured salinity
salinity measurement
salinity
CTDSAL
Extreme/unusual properties-Salinity
ExtremeSalinity
Salinity (PSU)
Salinity (ppt)
Salinity Sensor
Salinity at bottom
Salinity
SampSalinity
extreme salinity
extreme unusual properties/salinity
extreme_salinity
ppt_salinity
sal
salinity (PSU)
samp salinity
samp_salinity
sample salinity
water_salinity
reference or method used in determining salinity
salinity method
SalinityMeth
extreme unusual properties/salinity method
salinity meth
salinity_meth
amount of biomass; should include the name for the part of biomass measured, e.g. microbial, total. can include multiple measurements
sample biomass amount
Biomass
biomass
biomass, cell/ml
Date of sampling, in DD-Mmm-YYYY, Mmm-YYYY or YYYY format (eg., 30-Oct-1990, Oct-1990 or 1990) or ISO 8601 standard YYYY-mm-dd, YYYY-mm or YYYY-mm-ddThh:mm:ss (eg., 1990-10-30, 1990-10 or 1990-10-30T14:41:36)
sample collection date
COLLECTION_DATE
Colection Date
Collection Date
Collection date
CollectionDate
Collection_date
DATE_COLLECTED
Date mm/dd/yy
Date of Collection
Date
Month_of_Collection
Sample Collection Date
Sample collection_date
SampleDate
Sampling Date
Sampling date
Sampling_date
colection date
collection date (yyyymmdd)
collection date
collection_date
collection_date_general
collectiondate
date of collection
date sample collected
date
sample date
sample_collection_date
sampling date
sample collection date and time
sample collection day
Collection day
Day
Sample Day
collection day
collection_day
day
sample day
sample_day
sampling_day
study day
Method or device employed for collecting sample
sample collection device or method
Sample collection device or method
sample collection devise
SampCollectDevice
Sample Collection Device
Sampling Platform
samp collect device
samp_collect_device
sample collection method
How it was collected
Sample Isolation Method
sampling method
sampling_method
sample collection time
CollectionTime
Sampling Time
Sampling_time
Time
collection time
collection_time
sample_time
sampling time
time of sample collection
time
sample collection time period
sample time period
sampling time period
relative time in the project.
sample collection time point
Time Point
Time point
Time_P
Time_point
Timepoint
circadian time point
sampling time point
sampling_time
time point
timepoint
sample collection timezone
CollectionTimezone
collection timezone
collection_timezone
sampling timezone
sample collection year
Time of sample collection
collection year
isolation year
year isolated
year
year_collected
density of sample
sample density
Density
density
sample description
Comments
DESCRIPTION
Sample Description
Sampling_Description
samp_collect_information
sample comment
sample_description
sample_information
sampling_cruise
sample ID
Identifier
SampleID
SampleId
Sample_id
Source material identifiers
UniqueIdentifier
Unique_ID
artificial_number
identifier
sampleID
sample_ID
sample_id
sample_name
sample_name_in_paper
sample_tube_id
source material identifiers
source_mat_id
source_material_id
study_sample_id
submitted sample id
submitted_sample_id
unique.sample.id
unique_ID
sample mass
Water Mass
Processing applied to the sample during or after isolation
sample material processing
SampMatProcess
Sample material processing
SampleMethod
samp mat process
samp_mat_process
samp_processing
treat_conditions
treatment
sample number
Amount of sample collected
Sample Number
Sample_number
sample_no
sample_number
sample order
sample_order
sample package name
SamplePackageName
Amount or size of sample (volume, mass or area) that was collected
sample size
Amount or size of sample collected
SampSize
Sample Size
Sample size
amount or size of sample collected
samp size
samp_size
sample_size
sampling_size
size
describe state of matter(liquid, gas, solid or plasma)
sample state of matter
digesta fraction
state of matter
explain how and for how long the soil sample was stored before DNA extraction.
sample storage conditions
Storage conditions
StoreCond
samp_storage
storage conditions (fresh/frozen/other)
storage conditions
storage_condition
store cond
store_cond
sample storage duration
SampStoreDur
Sample storage duration
Storage Time
Storage time
days_stored
samp store dur
samp_store_dur
sample storage location
SampStoreLoc
samp store loc
samp_store_loc
sample storage temperature
SampStoreTemp
Sample storage condition
Storage conditions (fresh/frozen/other)
samp store temp
samp_store_temp
samp_store_temp_degrees_C
sampling_storage_temperature
sample strategy
SampleStrategy
Sampling strategy
sample_strategy
sample title
Genome Name / Sample Name
LibrariesMetagenomeName
LibrariesName
LibrariesSampleName
Manuscript Sample Name
Name
Sample Name
Sample name
SampleName
TITLE
Title
internal_label
name
sample name
sample_tital
sample_title
title
sample volume
samp_volume
sample_vol
sample_volume, L
sample_volume_L
volume of sample
volume
sample weight for DNA extraction
SampWeightDnaExt
Sample weight for DNA extraction
samp_vol_we_dna_ext
samp_weight_dna_ext
sample weight for dna extraction
sand content
Sand
percent_sand
sand
sand content average
Sand Average
sand content standard deviation
Sand Standard Deviation
scientific name
SCIENTIFIC_NAME
host_scientific_name
seasonal allergy
seasonal allergies
sediment type
sediment_type
selenium concentration
Selenium concentration
sequence method
LibrariesRunMachineType
LibrariesSeqChem
LibrariesSeqMake
LibrariesSeqMeth
LibrariesSeqModel
Platform
Seq_type
Sequencing Method
Sequencing device
Sequencing method
Sequencing type
Sequencing_platform
illumina_technlogy
illumina_technology
instrument_model
libraries run machine type
library run machine type
machine
platform
seq_meth
sequencer_type
sequencing method
sequencing_machine
sequencing_meth
sequencing_method
sequencing_technology
sequence quality check method
sequence quality check
type of wastewater treatment plant as municipial or industrial
sewage type
SewageType
sewage_type
shellfil allergy
foodallergies_peanuts
collection design of pooled samples and/or sieve size and amount of sample sieved
sieving
Sieving
composite design/sieving (if any)
concentration of silicate
silicate concentration
Silicate (SO4)
Silicate
silicate
silicon concentration
Silicon (??mol/ l)
Silicon (?mol/ l)
Silicon (Si)
Silicon concentration
Silicon
silt content
Silt (4-63 micron diameter)
percent_silt
silt
silt cray content
Clay+silt
Silt_Clay
percentclay_silt
silt_clay
size fraction lower threshold
size fraction upper threshold
sodium concentration
Na(mg/dm3)
sodium
sodium, M
sodium_mg_per_l
sodium_partPerMillion
sodium_ppm
sodium_umole_per_kg
sodium phosphate concentration
sodium phosphate
soil pH
soil_ph
soil classification based on local soil classification system
soil series name or other lower-level classification
soil type
Soil Type
Soil type
SoilType
sample_organic_matrix
soil_type
soiltype
reference or method used in determining soil series name or other lower-level classification
soil type method
SoilTypeMeth
soil type meth
soil_type_meth
standard operating procedures
Relevant Standard Operating Procedures
relevant standard operating procedures
strontium concentration
Strontium concentration
study description
materials attached with sampled material
substrate
substrate type
sucrose concentration
Concentration of sucrose
concentration of sulfate
sulfate concentration
Sulfate (SO4)
Sulfate
sulfate
sulfate, mM
sulfate_mM
sulfate_mg_per_l
sulfate_umole_per_kg
sulfate concentration in ground water
Sulfate in groundwater
concentration of sulfide
sulfide concentration
Sulfide (S2)
Sulfide
sulfide
sulfide, mmol/L
sulfide, uM
sulfide_mg_per_l
sulfide_umole_per_kg
sulfide concentration in groundwater
Sulfide in groundwater
sulfide concentration in sediment
Sulfide in sediment
sulfur concentration
S (ppt)
Sulfur concentration
tot_S
surface
IndoorSurf
SurfMaterial
indoor surf
surf material
surf_material
surface material
surface_sampled
suspended particulate matter amount in specific bulk material
suspended particulate matter amount
SuspendPartMatter
suspend part matter
suspend_part_matter
suspended particulate matter
the relative proportion of different grain sizes of mineral particles in a soil, as described using a standard system; express as % sand (50 um to 2 mm), silt (2 um to 50 um), and clay (<2 um) with textural name (e.g., silty clay loam) optional.
texture
Texture
reference or method used in determining soil texture
texture method
TextureMeth
texture meth
texture_meth
thymidine concentration
thymidine
time since last feeding
TimeAfterFeeding
time after feeding
time when gavaged with fermented milk strains
time_after_feeding
tissue type
TISSUE_TYPE
tissue_type
toluene concentration
Toluene
measurement of total depth of water column
total depth of water column
TotDepthWaterCol
tot depth water col
tot_depth_water_col
total mass
TotMass
tot mass
tot_mass
reference or method used in determining the total N
total N method
TotNMeth
tot n meth
tot_n_meth
total n method
reference or method used in determining total organic Carbon
total organic carbon method
TotOrgCMeth
tot org c meth
tot_org_c_meth
total organic C method
total organic c method
Total solids are dissolved solids plus suspended and settleable solids in water. In stream water, dissolved solids consist of calcium, chlorides, nitrate, phosphorus, iron, sulfur, and other ions particles that will pass through a filter with pores of around 2 microns (0.002 cm) in size. Suspended solids include silt and clay particles, plankton, algae, fine organic debris, and other particulate matter. These are particles that will not pass through a 2-micron filter.
total solids amount
Total solids (TS)
total solids
transparency
Transparency
tree nut allergy
foodallergies_treenuts
triclosan concentration
triclosan_conc
trihalomethane concentration
Total trihalomethanes
Human pregnancy, which is frequently divided into three terms of about three months each to refer to the fetus's development
trimester of pregnancy
trimester
tumor grade
tumor size
Turbidity is the cloudiness or haziness of a fluid caused by large numbers of individual particles that are generally invisible to the naked eye, similar to smoke in air. The measurement of turbidity is a key test of water quality.
turbidity
Turbidity (NTU)
Turbidity
describe updated date in database .
updated date
uranium concentration
uranium concentration in groundwater
Uranium in groundwater
uranium concentration in sediment
Uranium in sediment
urea concentration
Urea (??mol N/ l)
Urea (?mol N/ l)
urine collection method
urine/collection method
vaccine administration
Vaccine Treatment
vaccine treatment
vanadium concentration
Vanadium concentration
vitaminAdministration
vitamin
vitamintoday
volume filtered
Volume filtered
volume_filtered
the origin of wastewater such as human waste, rainfall, storm drains, etc.
wastewater type
WastewaterType
wastewater_type
water content
Water Average
Water content
water_content
water content in soil (g/g or cm3/cm3)
water content of soil
Water content of soil
WaterContentSoil
water content soil
water_content_soil
reference or method used in determining the water content of soil
water content of soil method
WaterContentSoilMeth
water content soil meth
water_content_soil_meth
water hardness
Total hardness
water temperature
water_temp
water type
Water Type
weight
host_tot_mass
host_weight
weight_in_grams
describe where host generally execise
where host generally exercise
exercise_location
whether there is cat, or not ? Use msv:envPetType
whether cat in house
whether there is daphinia magna or not ?
whether daphinia magna presence
daphinia magna presence
perturbation_daphnia_magna
whether host already drink formula
Formula
whether this host has already started eating or not?
whether host already eat solid food
SolidFood
solid food
whether host born via cesarean section, or not ? Use babyBirthDeliveryMethod by inputting "cesarian section"
whether host born via cesarean section
csection
whether host drinks alcohol
Alcohol
whether host eats gluten
gluten
whether host grow with cow milk
CowMilk
whether host has allergy
allergy
whether host has asthma
whether host has chickenpox
whether host has chorioamniotis
whether host has dysentery
Dysentery
whether host has excessive bihavior or not?
whether host has excessive behavior
Excessive_Behaviors
whether host has flea or not?
whether host has flea
Fleas
fleas
whether host has migraine
migraine
whether full medical history was collected
whether host medical history performed
MedicHistPerform
medic hist perform
medic_hist_perform
medical history performed
whether host removed appendix
whether host used antibiotics in 6 months
whether pets in house or not?
whether pets in house
PetsinHouse
pets in house
whether protease inhibitor use, or not?
whether protease inhibitor used
Protease_inhibitors(PI)
whether sample beadbeater
Beadbeater
whether host grow with breast milk
BreastMilk
which hand
hand (R/L)
hand
xylene concentration
Xylenes
zinc concentration
Zinc concentration
Zn_total
total Zn concentration
total zinc concentration
zirconium concentration
Zirconium concentration